Protein Info for RALBFv3_RS20610 in Ralstonia solanacearum IBSBF1503

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 58 to 77 (20 residues), see Phobius details amino acids 90 to 108 (19 residues), see Phobius details amino acids 114 to 141 (28 residues), see Phobius details amino acids 153 to 173 (21 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 231 to 254 (24 residues), see Phobius details amino acids 268 to 288 (21 residues), see Phobius details amino acids 297 to 315 (19 residues), see Phobius details amino acids 321 to 342 (22 residues), see Phobius details amino acids 354 to 378 (25 residues), see Phobius details amino acids 385 to 406 (22 residues), see Phobius details PF03092: BT1" amino acids 37 to 412 (376 residues), 42.9 bits, see alignment E=3e-15 PF07690: MFS_1" amino acids 45 to 365 (321 residues), 59.5 bits, see alignment E=2.8e-20

Best Hits

KEGG orthology group: None (inferred from 95% identity to rso:RS03756)

Predicted SEED Role

"Folate carrier, cyanobacterial type"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (437 amino acids)

>RALBFv3_RS20610 MFS transporter (Ralstonia solanacearum IBSBF1503)
MLTASGRNDGSEGRDQTLLYFGWLTLFIYLATPAGYLLDIQTSYLLKNQLHATATQISIF
RLVTGIPVYIAFAFGLARDHWNPLGLRDRGFFLIFAPATAVALIWMAFSGFSYLGLLIGM
MLAMLSSRFVAAAYQGLIALVGQEKLMSGRLSALWNVVSSVPVVAGALASGYISDHLAPQ
GAFFLVAAVTALIAVLGLWKPISVFGHLYEKPQARGADFVGNVRRLVKHRAVYPAVLICF
LWNFAPGSATPLQFYLTNALHASDSVYSYYNGIFAAAFIPTFLLYGFLCKKVSLNKLLWW
GTLVAVPQMIPLAFIHSANLALVLAAPIGLMGGVATAAYFDLAMRSCPPGLQGTLMMLVD
GVLALSARAGDLLGSWIYNSSPTHGFTYCVIATTVVYALILLLISLTPKALIATRDGEPN
PEAGAEVRNEPRETERT