Protein Info for RALBFv3_RS18585 in Ralstonia solanacearum IBSBF1503

Annotation: hemagglutinin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3268 transmembrane" amino acids 46 to 64 (19 residues), see Phobius details PF13018: ESPR" amino acids 1 to 46 (46 residues), 42.6 bits, see alignment (E = 1.3e-14) PF05860: TPS" amino acids 66 to 327 (262 residues), 235.7 bits, see alignment E=1.7e-73 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 105 to 201 (97 residues), 73.7 bits, see alignment (E = 8.8e-25) PF05594: Fil_haemagg" amino acids 313 to 370 (58 residues), 18.1 bits, see alignment (E = 7.1e-07) amino acids 457 to 530 (74 residues), 3.6 bits, see alignment (E = 0.024) amino acids 620 to 666 (47 residues), 7.5 bits, see alignment (E = 0.0014) amino acids 664 to 740 (77 residues), 8.8 bits, see alignment (E = 0.00057) amino acids 769 to 829 (61 residues), 6.4 bits, see alignment (E = 0.0032) amino acids 816 to 887 (72 residues), 20.9 bits, see alignment (E = 9.4e-08) amino acids 879 to 929 (51 residues), 14.9 bits, see alignment (E = 7.3e-06) amino acids 924 to 971 (48 residues), 6 bits, see alignment (E = 0.0042) amino acids 941 to 996 (56 residues), 6.5 bits, see alignment (E = 0.0031) amino acids 1000 to 1049 (50 residues), 10.4 bits, see alignment (E = 0.00018) amino acids 1051 to 1102 (52 residues), 3.8 bits, see alignment (E = 0.022) amino acids 1244 to 1295 (52 residues), 10.2 bits, see alignment (E = 0.00022) amino acids 1261 to 1335 (75 residues), 22.6 bits, see alignment (E = 2.8e-08) amino acids 1390 to 1463 (74 residues), 8.9 bits, see alignment (E = 0.00055) amino acids 1524 to 1576 (53 residues), 11.1 bits, see alignment (E = 0.00011) amino acids 1846 to 1915 (70 residues), 12.3 bits, see alignment (E = 4.5e-05) amino acids 2030 to 2071 (42 residues), 6.4 bits, see alignment (E = 0.0034) amino acids 2105 to 2159 (55 residues), 6.3 bits, see alignment (E = 0.0036) TIGR01731: adhesin HecA family 20-residue repeat (two copies)" amino acids 314 to 350 (37 residues), 7.1 bits, see alignment (E = 0.00059) amino acids 350 to 386 (37 residues), 6.9 bits, see alignment (E = 0.00067) amino acids 515 to 551 (37 residues), 10.8 bits, see alignment (E = 4e-05) amino acids 558 to 589 (32 residues), 8.3 bits, see alignment (E = 0.00024) amino acids 597 to 635 (39 residues), 14.9 bits, see alignment (E = 2.1e-06) amino acids 620 to 655 (36 residues), 13.3 bits, see alignment (E = 6.8e-06) amino acids 679 to 717 (39 residues), 20.2 bits, see alignment (E = 4.7e-08) amino acids 725 to 760 (36 residues), 8.9 bits, see alignment (E = 0.00016) amino acids 768 to 798 (31 residues), 10.5 bits, see alignment (E = 5.3e-05) amino acids 784 to 822 (39 residues), 10.5 bits, see alignment (E = 5.2e-05) amino acids 838 to 865 (28 residues), 17.3 bits, see alignment (E = 3.7e-07) amino acids 846 to 888 (43 residues), 18.7 bits, see alignment (E = 1.3e-07) amino acids 890 to 930 (41 residues), 24.9 bits, see alignment (E = 1.5e-09) amino acids 924 to 950 (27 residues), 12.4 bits, see alignment (E = 1.3e-05) amino acids 954 to 992 (39 residues), 8.3 bits, see alignment (E = 0.00025) amino acids 974 to 1008 (35 residues), 11.7 bits, see alignment (E = 2.2e-05) amino acids 995 to 1032 (38 residues), 14.9 bits, see alignment (E = 2.1e-06) amino acids 1015 to 1050 (36 residues), 20.3 bits, see alignment (E = 4.3e-08) amino acids 1061 to 1100 (40 residues), 37.2 bits, see alignment (E = 2.1e-13) amino acids 1102 to 1136 (35 residues), 15.6 bits, see alignment (E = 1.3e-06) amino acids 1122 to 1163 (42 residues), 17.9 bits, see alignment (E = 2.4e-07) amino acids 1173 to 1199 (27 residues), 12.4 bits, see alignment (E = 1.3e-05) amino acids 1188 to 1220 (33 residues), 22.4 bits, see alignment (E = 9.2e-09) amino acids 1228 to 1251 (24 residues), 7.6 bits, see alignment (E = 0.00041) amino acids 1255 to 1294 (40 residues), 13 bits, see alignment (E = 8.5e-06) amino acids 1298 to 1335 (38 residues), 20.4 bits, see alignment (E = 4e-08) amino acids 1525 to 1563 (39 residues), 24.8 bits, see alignment (E = 1.7e-09) amino acids 1857 to 1894 (38 residues), 8.7 bits, see alignment (E = 0.00018) amino acids 1877 to 1914 (38 residues), 10.5 bits, see alignment (E = 5.1e-05) PF13332: Fil_haemagg_2" amino acids 2018 to 2090 (73 residues), 22.8 bits, see alignment (E = 1.8e-08) amino acids 2103 to 2252 (150 residues), 39.7 bits, see alignment 1.1e-13 amino acids 2180 to 2283 (104 residues), 16.1 bits, see alignment (E = 2.1e-06) amino acids 2324 to 2496 (173 residues), 174 bits, see alignment 5.9e-55

Best Hits

Predicted SEED Role

"Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3268 amino acids)

>RALBFv3_RS18585 hemagglutinin (Ralstonia solanacearum IBSBF1503)
MNKHLYRIVFNKTRGLLMAVAENVASDGKQAGTSDAPRAGGVLATVRPLCFSILLAFGLV
GSLAQAQIVADPGAPRGQQPTVLNAANGVPVVNIQTPSAGGVSRNTYGQFDVNQQGAILN
NARTNAQTQLGGWVQGNPWLATGTARVILNEVNSSNPSQLRGYVEVAGDRAQVVIANPAG
ISCDGCGFINSNRVTLTTGTPILNGGNLDGYRVQNGTVSITGGGLDASRADYTDIIARSV
QVNAGIWANTLKVSTGANEVSADHSQTTAIAASGPAPSYGIDVASLGGMYAGKITLVGTE
AGVGVRNAGQIGASAGDVTVTADGRLENSGRITATANVHVDTNGGIANAGTVYAQGDTQL
ATRGNVSNTNTGVIAAQGNTTIAATGASSTIDSQTGSVLGAGLRGDGTVGTSGTLQLSAT
GQLNAQGQNLAGGDLAASAAAISLADSRTAARNVTLTAGSGDLDASRATVSATQAWTANA
AGTLRTDGANVSADRLTATAHDLSNVQGQLIQTGASDLSIQLPGQLDNTGGRIATNSANL
SLGAQTLVNTGGRIEHAGTGTLSMAVGTLNGERGVIGTNGALQLTAQSAVLDAGQTSGDT
LQIRAGTLSNRSGQIGQTGTGGASIQASGSLDNTGGLIVANGPDLVLGASTLTNADGRIA
HAGTGTLAITATTVDGARGTITGNGALTLNAQSVTLDGGQTTAGNLTIDATTLSNRSGQL
LQTGTGAASIQATQRIDNTGGRLATNGTDLTLGTATLTNTDGRIEHAGTGALAITATTVD
GARGTIASNGTLGLHAQAATLDGGQTTANRLQVDTGVLSNRSGQLVQTGNGMASVGATTL
LDNTGGTLAGNGDLAVTAGHLVNQGGTLQAAGASGLSITATGQVDNSAQGKIGAGGAATI
AAASLSNAGGTLTAGDALHVQANGAVDNTQGVLAANRDVSVAAGAVTNAAGRIGSVQGGT
LVTASQGGVDNAAGRIEAAQALTVAGNGIANTDGVVAGQDVRLDSLAQAFDNTRGTVAAR
GLLDVQSGPLTNDAGMLQAAGALTIDTHGQTLLNTHSGTTGGILGQGAVTLQTGNLDNSA
GFIGANGDLKATAAQITNAQGGQISGTKTIALTGTGLDNRGGTLQAMGNLTADVGSGTVD
NSGSLMRSGATLDVRAGTVNNTGTQGTNQGLEGQNVALTADQINNQGGAIRADQALTLTG
SGALNNAQGLISSGQSVQVQDRNPGAKTQSVVNTSGTLIAGKSLGVDSASLSGDGRILSQ
GDLSLNLAGDFTNTGELQANGKATVQTRGTLTNQSALKAGDTLTVSAGSIDNTASGEISA
GTTNLTAAGTLTNRGLIDGGNTNIDAGTVNNLGTGRIYGDHVAIQAGTVNNDVENGTAAT
IAARNRLDIGAQTVTNREHALIFSGGDMAIGGALDGNRLATGSAGTVNNNSASIESLGSL
TLAANQVNNTNEHFSTAVQSQGTQHVVEYQGDGAANRYKAGESGVYIYNDESDHLHTPEG
NYESWHKYEYDRTTTATVITGSDPGKITSAGAMRIDAGTLFNDKSQIIAGGTLSANVGTL
QNTEVTGQQTVTDAGTATSYWRHQKKGRDDTGSSSTAYNPPAAISDIRLTPTVYKDNTAP
GGSGTQVGALTVASVTQGAQSAAAASVSIGAGRAVGAVTQGVQGIGSVGGGRTVSAITEV
AAVTPAAGGQSLVVRTGGVNTSLPNNSLFHLNPNPGGSYLIETDPRFASYRTWLSSDYML
TQLRVDPALTQKRLGDGFYEQKLIREQIAQLTGRRFLDGYSSDEAQYRALIDNGVTYAKE
WGLRPGVELTAAQMAQLTSDIVWLVEKDVTLPNGQTTRALVPQVYVHVKPGDLDGSGALI
SGQSVNLNVSGDLVNQGSIAGRDVVSITAENVKNLGGRITGGDVAVRARTDLDNLGGIID
ANNSLSAIAGRDLNIATTTHSNSNAQGSITNVSRIAGLYVTAPSGGTLVASAGRDLNLSG
AQIGNASTGGQTVVAATRDLNLGTVNTSSSQSLAWDSKNWRKDSTQQEVGSSIQTNGDLR
LSAGNDLNARGASVTSEQGALVATAGNNVNLSAAQTTRDVDEAHQFKGSSSWFSKKTITT
RNTLSETTTQGTTFSGNTTYVQAGNDINVKGSNVVSTEGTTLIAKHDVNIEAATDSTTER
HLREEKKSGLFSSGGIGFTIGTQQQSQDNQDARTTAAASTVGSTNGNVAIGAGNHYQQVG
SNVVAPQGDITIQAKKVDILEAQETSHSTQETQFKQSGLTVAVTAPVIAAIQTAQQMGRA
AGQTSDGRMKVLAGTTTALAGKNAADAVASDPKSGGGVSISITVGGSKSQSKTTQDTSTA
AGSKVAAGGNVSIQATGAGQDSTLTVQGSDIKGGGDVSLKADGDINLLAARNASEMHRSS
SSVSGGVGVAVSLNSNGAAFGVTANASASRGKGEGSDVSWTNTHVSAGNTLTLESGGNTN
LKGAVAAGKQVIANVGGDLNIESLQDTSKYHSKDQSISGSVTVGYGFSGSASASQQKIDS
DFASVTEQSGIKAGDKGFQVNVRGNTDLKGAVIASTDKAVHDGVNSLTTATLTQSEIHNR
AEYSASSIGIGGGYSSGGGKSDDSGGKGASTDGVGTNQQGKATTGGDKVPGSDLPASKDG
FSATPPIVMGASGSGSSVTGSGISGGTIHITDGAKQQALTGKDAEQTVASINRGVSSERD
SSNALKPIFNEQEIQAGFEIVGALQREAGTFLSNRAKDVDQKNAQAKDADAKAADPSNGL
TDEQRLALRDQASALRTEAQALNDKWGAGGTYRQITTALMAGVGGNVTGSTAQFAQNMVV
NYVQQQGASYIGKLVADGTLVEGSPAHAALHAIVACAGAAASSQSCGSGALGAAASSLLT
GLFSETSPDETATQREGKRNLITSLVTGIATMSGADATTATNGAIAAVDNNWLATQQIVQ
MKKELSSAKSTLEQLKVASKWAYISTKQDVLTTTGIGKGLAESGWNDVKGVAEFLSHPIE
GLNGLKQLISSPDARQQLGDALFKELDAKIDRMSRAINEGGDANAEQLGKDLGGLLWQVG
SVVTGVGGVAKGATKLASVGVRLGTDMMETLSGAAKFDRLLANGGLFAADGKPLMDFRNL
TNAQKSVVGEMLGGEKVKQLLRGGEKIGRSPGIGETGIDDLYKVNKPGVDYVVVEYKFGS
SKLGSTADGLQMSDDWLTGANTSYNRLLESVGSQAQADKLSIALQNGRVEKWLVHTDPYG
KVTVGLLDKNGKFVPNPAQASKIIGGGQ