Protein Info for RALBFv3_RS16990 in Ralstonia solanacearum IBSBF1503

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1432 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 43 to 64 (22 residues), see Phobius details amino acids 173 to 192 (20 residues), see Phobius details PF05488: PAAR_motif" amino acids 74 to 141 (68 residues), 60.2 bits, see alignment 4.6e-20 PF20148: DUF6531" amino acids 233 to 308 (76 residues), 72.3 bits, see alignment 8.4e-24 PF05593: RHS_repeat" amino acids 421 to 457 (37 residues), 31.4 bits, see alignment (E = 4.9e-11) amino acids 529 to 566 (38 residues), 29.8 bits, see alignment (E = 1.5e-10) amino acids 550 to 587 (38 residues), 30.3 bits, see alignment (E = 1.1e-10) amino acids 637 to 673 (37 residues), 35 bits, see alignment (E = 3.8e-12) amino acids 722 to 757 (36 residues), 28.4 bits, see alignment (E = 4.2e-10) amino acids 763 to 796 (34 residues), 29.6 bits, see alignment (E = 1.8e-10) amino acids 988 to 1017 (30 residues), 22.1 bits, see alignment (E = 4e-08) TIGR01643: YD repeat (two copies)" amino acids 529 to 569 (41 residues), 30.6 bits, see alignment (E = 3.3e-11) amino acids 577 to 613 (37 residues), 24.8 bits, see alignment (E = 2.3e-09) amino acids 637 to 677 (41 residues), 27.7 bits, see alignment (E = 2.7e-10) amino acids 722 to 750 (29 residues), 24.5 bits, see alignment (E = 2.7e-09) amino acids 747 to 781 (35 residues), 22.8 bits, see alignment (E = 9.7e-09) amino acids 763 to 797 (35 residues), 21.5 bits, see alignment (E = 2.5e-08) PF03527: RHS" amino acids 1192 to 1225 (34 residues), 56.6 bits, see alignment (E = 4.4e-19) TIGR03696: RHS repeat-associated core domain" amino acids 1219 to 1298 (80 residues), 87 bits, see alignment 9.5e-29 PF14412: AHH" amino acids 1310 to 1397 (88 residues), 43.1 bits, see alignment 9.5e-15

Best Hits

KEGG orthology group: None (inferred from 67% identity to bmu:Bmul_6085)

Predicted SEED Role

"Rhs-family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1432 amino acids)

>RALBFv3_RS16990 hypothetical protein (Ralstonia solanacearum IBSBF1503)
MFEAARVTDPIEHTSALTGFLIGAVLGVALIAAVAFATFTCGFGVALLAGLAAGVGASAI
LGLGEAIGKSRWFTSTTGTILTGSTNVFVNGKLAAFAMASTVACSKHSPVPLIAQGSGGV
FINSKPAARKGDKITCGAAVADGSANVFMGGGTQTYLPYDDEVPPWLRTTVDWAFALAGL
VGGLAGLVKAAGGLSRAVLPCAAKFIGGYVIGEAVGRYVAAPVVSRVMGGLFGHPVDVTT
GRKVLLADDETDAVVPSPMPLVCRRFYASNLDPAGTLGRGWVLPWELRLHRRDGRLWYTD
AQGRESGFPLVAPGQMAFSDTEQRYLTCTPDGRYILHDLSETYYDFGRLDAEGDGVAWVR
RIEDQAGQWQDYARDGEGRVREILTSGGVRVALDYEPLHGRLATVATVRDLVRQVLVAYG
YDDAGQLASVTDANGIVVRRFSYADGRMTHHVNALGFTCSYEWAEVAGAQRVVATHTSDG
EHWTFGYDIEARESWTRHEDGRTARWRYDERFQVVACTDLDGGHYAIDYNAAGMPVSVQL
PGDRRIAFEYDEAGRIVHETDPLGRVTRTRYDGNSLRPAQVTLPDGSNWQSTYDRQGRLL
GTLDPLGRTERYEYPDGLTALPAAQIDAHGGRKTLEWNLRGQLVAYTDCSSKTTHYEYDE
TGQLTGIVNALGERTGYARRPTGEVLAVALPDGSAETFEYDAAGLPVTHTGMGERVRRWT
RNTRGQVLEAIDPAGRALRYRYDSEGRLTELAAATGARYAFGYDAAGRLQSETRPDGVVR
RFRYGAAGELAEIETTGAPDAATDRATRPPQTAAAPTRTARFERDALGDLLAQHTATEAT
HYTRDPLGRLLSVERIPTQAGLALGVEPDTVSFDYDKAGRLVAEHGTNGIVRYTLDALDN
IEALDLPHGPSLRTLRYGSGHVHQVRSGEQVVSDIERDDLHREVLRTQGRLVQRTGYDTL
GRQVWQSSDLLRSILEPERGRLWRSYRYDASGELAERRDSVRGSVRYRYDPAGQLLQQAR
LVDNSVETFAWDAAGNLLDETERSSRGHIEGNRLRMWQDMRFEYDAWGNLSVKCKGANQV
QRFTYDGQDRLLAVRTETLRGVTETRFTYDPLGRRIAKHETQTETVGVKHAPRTWRFVWQ
GLRLAQEIRETGTSSYVYSPDAPYTPAARVDALIAEAIASAAIDTAKRAAQIYHFHTDLV
GAPLEVTDEAGDLVWAGRYAAWGKVERGEDSRLTPRIEQPLRYAGQYADEGTGLHYNTFR
YYDPDVGRFISQDPIGHLGGENLYAYGANPTGWTDPWGWCSTKLGKNMGARTGDGMANHH
LIPEELMKHPDYAAMFKRLRSMGFDGDGASNGTFLPGSSQLAKDMGLPGHWSNHDQFTAA
VEVELKKLNQQFLAGRLSDTQLALGIGRVQNMAREGLESGKYVVDAITGRLL