Protein Info for RALBFv3_RS16340 in Ralstonia solanacearum IBSBF1503

Annotation: secreted protein popf2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 PF05819: NolX" amino acids 106 to 539 (434 residues), 656.8 bits, see alignment E=1e-201

Best Hits

Swiss-Prot: 64% identical to NOPX_SINFN: Nodulation outer protein X (nopX) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 64% identity to rhi:NGR_a00700)

Predicted SEED Role

"Type III secretion translocator of effector proteins (HrpF, NolX)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (587 amino acids)

>RALBFv3_RS16340 secreted protein popf2 (Ralstonia solanacearum IBSBF1503)
MSLGNVSSLSSANPVFPFGNPDASTDPDTPGLSDATQDSLYQGISAKLSQSLGSSGDNTD
DGDIIQNSFVPPAGSDSTPDATPQEAAQPASSPLTWNGGTLTDSELQIVAVLDRHKDQCP
LEWSGLQDKINDPSTSPDLKQALQGLAQDPQLFYAIGSQGDGKCGGKIKAKDLDAFSGNH
PQVAAFNEQQAKGYEQNYIPSDGSGNGLPAVMTQSDALRELYKYSDDLPKHLGEADFQQI
VDGTAKTGKCPPQVIAAAQYFLDHKDAWNKLTGGGEVGKADFLQAASSAMSLTQPELDTL
KTINANQDAFFGNGDLTRDKLASMADNKQLDPKVRQAAKQLLGDPVLFGLLNNAITGYKT
HHGFFSSGGGHTVDSGNIAGRDFRQFYGNLSQANRTVQTPRTHAPKTAEEQAAVADMMMG
VADQPEIKSPKHNGGFLVHALDDVLKVGAKALDWASMAVGMLSFVPGLGELADAASTALE
AESQACNILHAAVSGGDVKKALEEAGLSLGSAAIGNIGGPEVRLAMKEGLTKTLLEKAAN
QGIGLGVDQAKSYAENYLGNLQARLEAALPPTSSLYDPTRMDPGYAP