Protein Info for RALBFv3_RS15430 in Ralstonia solanacearum IBSBF1503

Annotation: fatty acid desaturase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 56 to 74 (19 residues), see Phobius details amino acids 80 to 96 (17 residues), see Phobius details amino acids 119 to 128 (10 residues), see Phobius details amino acids 160 to 175 (16 residues), see Phobius details amino acids 211 to 230 (20 residues), see Phobius details amino acids 236 to 256 (21 residues), see Phobius details PF00487: FA_desaturase" amino acids 78 to 320 (243 residues), 121.2 bits, see alignment E=3.4e-39

Best Hits

KEGG orthology group: None (inferred from 96% identity to rsc:RCFBP_20190)

Predicted SEED Role

"probable hydrocarbon oxygenase MocD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>RALBFv3_RS15430 fatty acid desaturase (Ralstonia solanacearum IBSBF1503)
MPRSPHPHDAYRLIGGAGDDAVAHGLANAAWYQCPLPRPLMKDLMKRRDGRAIRDTVLWF
AAIGVAGALAVWAWTLQSWWALPAFLLYAGLYAGPADSRWHECGHGTAFKTRWMNDTLYQ
VAAFMLLRQPTVWRWSHARHHTDTLVTGRDPEIAVPRPPSLLYLGLALFNLHGGLRELRA
VLRHARGTVGAAEATFVPATEHRRVVREARAWLAVYAAIAVACVATRSILPALLVGPVPA
LAGAWLYLFFGLPQHAGLPENVLDHRLNCRTVYMNPVFRFLYWNMNYHVEHHMFPMVPYH
ALPRLHEAICADCPTPYPNMLSAYREIVAAVLRQRRDPTYFVRRELPPQAGPARFAPVAA
AAPAIPVPSQPGDSNAPMDSGLLTR