Protein Info for RALBFv3_RS15140 in Ralstonia solanacearum IBSBF1503

Annotation: recombinase RecB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 959 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF12705: PDDEXK_1" amino acids 685 to 939 (255 residues), 107.8 bits, see alignment E=4.8e-35

Best Hits

KEGG orthology group: None (inferred from 96% identity to rsc:RCFBP_20244)

Predicted SEED Role

"Helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (959 amino acids)

>RALBFv3_RS15140 recombinase RecB (Ralstonia solanacearum IBSBF1503)
MQTLAFAPGPAFLPHAADAAWRFFDAHAAQAPGAGVVVVPTAAQIPGVRGALHASALAGG
VPRLLPRILTLGHWLLDLPPEPGLPAARSPLSRLLAVQQALKTQAWLREALGAQDDAALW
GVAQVLVTVSDELSQRWLTLDAADSETDGRHDVLEAALSAALEHTYAQLSERFLGTESRI
VLTFWRLLSGASDPIPVRLRAMRRLLDALRGPMVWMSPTDPEGADLDFLTRAAGRVPVLR
IGYDWQAREPAPEATAPATHAAFRNLLLHAWSECGTAAQPAPEASAEAERPPPGLRIAGA
ARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTT
RAAAALMRWLDVVQGDGDTAALLDLLKSPFCLREADAPSSVAPAWVAELERRVRRRNVSG
GWGRLRRLAAQRGTDTDAADVTDATDAGPLAERLGLLADEAALWRRAGHATLEAWVTLLA
GTLDRLRMRTGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFSLQEWRALLSMLLESAVF
SEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPDR
AQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLERLQRRLAVAGMRIDAPVV
LPALQTASRPTDMPAPAAPALVPATLSAAAYNSLRRCPYQFFVGRMLRLGELGEVSDELE
KRDVGELLHAILHRFHRQLLDTPMADPADRLALLQSLTDERFGSLLAEDGHALRFYRRWQ
GVMPSYLAWQAAREAEGWRFEAGEVDADTSIALPGGQALRLRGRIDRIDTHPEHGVAVLD
YKTQSPIALARKAKTPFEDCQLPFYGLLDARAAMGGWVSLDGEARGDKRETGLPDFTEVV
DWLTEQMGKDMTALAAGAPLPAFGDESACRYCAARGLCRKGYWSAGAAREPQPETEGQP