Protein Info for RALBFv3_RS14765 in Ralstonia solanacearum IBSBF1503

Annotation: DNA internalization-related competence protein ComEC/Rec2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 846 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 24 to 41 (18 residues), see Phobius details amino acids 49 to 67 (19 residues), see Phobius details amino acids 268 to 291 (24 residues), see Phobius details amino acids 312 to 335 (24 residues), see Phobius details amino acids 356 to 376 (21 residues), see Phobius details amino acids 381 to 401 (21 residues), see Phobius details amino acids 423 to 443 (21 residues), see Phobius details amino acids 451 to 474 (24 residues), see Phobius details amino acids 482 to 500 (19 residues), see Phobius details amino acids 508 to 530 (23 residues), see Phobius details amino acids 537 to 555 (19 residues), see Phobius details PF13567: DUF4131" amino acids 22 to 198 (177 residues), 90 bits, see alignment E=2.8e-29 TIGR00361: DNA internalization-related competence protein ComEC/Rec2" amino acids 155 to 801 (647 residues), 325.2 bits, see alignment E=7.3e-101 PF03772: Competence" amino acids 244 to 529 (286 residues), 195.9 bits, see alignment E=1.7e-61 TIGR00360: ComEC/Rec2-related protein" amino acids 265 to 466 (202 residues), 83.8 bits, see alignment E=1.8e-27 PF00753: Lactamase_B" amino acids 571 to 767 (197 residues), 34.3 bits, see alignment E=4.7e-12 PF12706: Lactamase_B_2" amino acids 583 to 744 (162 residues), 32.2 bits, see alignment E=1.7e-11

Best Hits

KEGG orthology group: K02238, competence protein ComEC (inferred from 96% identity to rsc:RCFBP_20314)

Predicted SEED Role

"DNA internalization-related competence protein ComEC/Rec2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (846 amino acids)

>RALBFv3_RS14765 DNA internalization-related competence protein ComEC/Rec2 (Ralstonia solanacearum IBSBF1503)
MRALLIGFVAGCMALQTRPVLVPVWQPVLLALACGLIALALRRAGQSPMLISGIAVLVAA
CVGFGWSDWRAQQRLSVVLAPEWEGKAIQATGVVAELPQVTEDATRFLFHIESSDAGDAV
PPRVRLSWYGKRNWNERRRERGAIADRRAGIPDLQPGQRWQLTLRLKRPHSLMNPGGFDG
EYAMLADDIRAAGTVQTGKRARNALIGETDAGFGLQVERWRAAVRRHILAALPDARYGPV
MVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFGLARW
LRTPLPLRMPAQRAAAIAAMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLTDRSVPASL
SLCWAAAVVALVDPWAVMSAGFWLSFGAVAVIFLAARMAAADAGGDARPSAWLRRAWRGL
RGGARIQLAVTVGLLPLTLLLFQQVSVVSAAANALAIPVVSLVTTPLALIGAALPEPWAQ
PVLAWAEASFGWLVSWLDGLSAPAWSVWTAPVAPAWAWLLAIGGVPLLLAPGGHRAWAWR
AQGVLLLLPMLLARAPAPPPGAFRLVAFDIGQGAAALVETAGHRLLFDTGPRYGDLADAA
DRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAGVPVRTMLASLPPGHRLGERARA
YGIDTAGCLAGQRWTWDGVAFEILHPVQAPPDRAPPSSNARSCVLRIAGERHAALLAGDI
GSAQEMALIAAEAPERLMADILLVPHHGSKTSSSGAFLDAVSPQVAIFQVGYRNRYGHPH
PQVWQRYGARDIERLRTDAAGAVVIETGGDALEVRTARSMRPRYWSSALEVAALADATEA
PADAQP