Protein Info for RALBFv3_RS14665 in Ralstonia solanacearum IBSBF1503

Annotation: XRE family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 113 PF13560: HTH_31" amino acids 23 to 81 (59 residues), 41 bits, see alignment E=2.8e-14 PF12844: HTH_19" amino acids 25 to 84 (60 residues), 34.8 bits, see alignment E=2.1e-12 PF01381: HTH_3" amino acids 28 to 82 (55 residues), 47.3 bits, see alignment E=2.5e-16

Best Hits

KEGG orthology group: None (inferred from 96% identity to rsc:RCFBP_20391)

Predicted SEED Role

"miscellaneous; not classified regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (113 amino acids)

>RALBFv3_RS14665 XRE family transcriptional regulator (Ralstonia solanacearum IBSBF1503)
MLHAMTVKRPDPSPSHPAPISVALGKRVKQCRHAAEKSQETLAFEALVDRTYISSIERGI
ANPSVETLANICHCLGVTLSELFAPLDGVSLAPTGKRRANAASPPEIKRGRLR