Protein Info for RALBFv3_RS14515 in Ralstonia solanacearum IBSBF1503

Annotation: elongation factor P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 PF08207: EFP_N" amino acids 4 to 60 (57 residues), 60.5 bits, see alignment E=1.9e-20 TIGR00038: translation elongation factor P" amino acids 4 to 188 (185 residues), 208.2 bits, see alignment E=4.2e-66 PF01132: EFP" amino acids 68 to 121 (54 residues), 71.2 bits, see alignment E=8.4e-24 PF09285: Elong-fact-P_C" amino acids 129 to 187 (59 residues), 72.5 bits, see alignment E=2.8e-24

Best Hits

Swiss-Prot: 90% identical to EFP_RALPJ: Elongation factor P (efp) from Ralstonia pickettii (strain 12J)

KEGG orthology group: K02356, elongation factor P (inferred from 98% identity to rsc:RCFBP_20408)

Predicted SEED Role

"Translation elongation factor P" in subsystem Translation elongation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (189 amino acids)

>RALBFv3_RS14515 elongation factor P (Ralstonia solanacearum IBSBF1503)
MKIAQELRAGNVFMWKDEAMVVLKTEYSRSGRSGAVVKMKYKNLLTGAGGEWVFNADDKL
DQVILDKKEADYSYFDGTMYVFMDPVSYEQYNVEPAAMGSALNYLQDGMKVEVTFYNENA
ISVELPTTVVREIIYTEPAVKGDTSSGKVLKAAQINDNTDFVIQVPLFCNTGDKIEIDTR
TDEYRSRAK