Protein Info for RALBFv3_RS10850 in Ralstonia solanacearum IBSBF1503

Annotation: ammonia channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 515 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 88 to 109 (22 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details amino acids 210 to 233 (24 residues), see Phobius details amino acids 263 to 285 (23 residues), see Phobius details amino acids 297 to 317 (21 residues), see Phobius details amino acids 329 to 349 (21 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details amino acids 416 to 436 (21 residues), see Phobius details amino acids 461 to 483 (23 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 86 to 513 (428 residues), 448.9 bits, see alignment E=8.1e-139 PF00909: Ammonium_transp" amino acids 88 to 513 (426 residues), 411.4 bits, see alignment E=1.7e-127

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 99% identity to rsc:RCFBP_21144)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (515 amino acids)

>RALBFv3_RS10850 ammonia channel protein (Ralstonia solanacearum IBSBF1503)
MKTWFTRFLTAGAVAAVLAGAVIAAPAMAQDKPAASAPAAEASAPAAAAAASEPAAASAA
AAAPAAAAAAPAAAPAAATPVPNKGDTAWLLVSTAFVILMTLPGLALFYGGLVRKKNMLS
ILMQCTGIFSLVMILWAVYGYSIAFTEGNAFFGGLDRLFLKGLTPDSVAATFSKGVVVPE
YAYFAFQGAFAAITCALIIGAFAERAKFSAVLVFVVLWFTFAYLPIAHMVWFWPGPDGFT
DAKAAEALTAKGGWLFQKGALDFAGGTVVHINAAVAGLVGAFLFGKRIGFGREALKPHSL
TLTMVGASLLWFGWFGFNAGSALEANGSAALAFVNTLLATAAAVLSWSFGEWIGKSKPSM
LGAASGAVAGLVAITPAAGFVGPMGAIALGIIAGLLCLWGVNGLKRMLGMDDTLDVFGVH
GVGGILGALLTGVFASPSFGGTGVYDYVANKVGDYSIGSQLWIQAQGVLTTIVWSSVVAF
IAYKIVDAVIGLRVPEEEEREGLDITSHGETAYED