Protein Info for RALBFv3_RS09275 in Ralstonia solanacearum IBSBF1503

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 53 to 70 (18 residues), see Phobius details amino acids 221 to 249 (29 residues), see Phobius details PF01062: Bestrophin" amino acids 1 to 284 (284 residues), 310.6 bits, see alignment E=6e-97

Best Hits

Swiss-Prot: 91% identical to Y3414_RALSO: UPF0187 protein RSc3414 (RSc3414) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K08994, putative membrane protein (inferred from 88% identity to rsl:RPSI07_0028)

Predicted SEED Role

"probable membrane protein STY1534"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>RALBFv3_RS09275 hypothetical protein (Ralstonia solanacearum IBSBF1503)
MVVRPHLHWFRMLLAWRGSVLPQLLPRLFLIFCISLVALAVHAHLFPITVNLSTTPFSLI
GIALAVFLGFRNNASYDRYWEARKLWGQLLNDARSLTRQALTLSRAPMAAADVRAFVQVL
GALPHALRHQLRRTDPHDDLSTRLPAPLFERVMASRYRPATLMLWLGEWVQQRSREGALD
AWAVLAFDRNLNELSNVIGGCERIASTPLPFAYSVMIHRTVYFFCAALPFGLVESIGVFT
PVFSVFVAYTFMAHEAIAAQIEEPFGTEDNDLALNAMSAMIEGAVREMSGEPIPEPGTAA
AQVCILD