Protein Info for RALBFv3_RS09015 in Ralstonia solanacearum IBSBF1503

Annotation: SET domain-containing protein-lysine N-methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 PF00856: SET" amino acids 40 to 141 (102 residues), 84 bits, see alignment E=4.9e-28

Best Hits

KEGG orthology group: K07117, (no description) (inferred from 96% identity to rsc:RCFBP_10105)

Predicted SEED Role

"Proteins containing SET domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (179 amino acids)

>RALBFv3_RS09015 SET domain-containing protein-lysine N-methyltransferase (Ralstonia solanacearum IBSBF1503)
MPRSSTAAKDLDDAQAQTPPEPAGLRRRDRIAVRESGVHGRGVYAVAAIAQGKKIIEYKG
EHISWKEALRRHPHDPSDPNHTFYFSLEDGSVIDAKYGGNRARWINHACKPNCEAREKDG
RVFIHALRDIEAGEELFYDYGLVIEGRQTKALKAQFACHCGAKTCRGTMLAPPEKKTKK