Protein Info for RALBFv3_RS03890 in Ralstonia solanacearum IBSBF1503

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 transmembrane" amino acids 20 to 46 (27 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 169 to 185 (17 residues), see Phobius details amino acids 200 to 222 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 17 to 121 (105 residues), 66 bits, see alignment E=1.8e-22 PF00528: BPD_transp_1" amino acids 36 to 225 (190 residues), 87 bits, see alignment E=6.7e-29

Best Hits

KEGG orthology group: K10040, putative glutamine transport system permease protein (inferred from 98% identity to rsc:RCFBP_11137)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (231 amino acids)

>RALBFv3_RS03890 amino acid ABC transporter permease (Ralstonia solanacearum IBSBF1503)
MPHFDLSMLLSGQYHQWLVSGFFLSIKLSVLAFVLALPLGIVVALLRMAPSAPLRAIGQA
FVEAIRNVPLLAHMLFWYFGAPQLLPNAVRTWLYDLNYEAASAVIALVLYTAAYMAEDIR
SGLRSIPKEQLEASRALGLSFLQAMRRVILPQSLRVTVPPLVSQTLNLWKNSSIAMVIGV
AELMYQAQQVESATFRGFEAFAFATAAYLTISIAITVFSAWYQHRYPVRTL