Protein Info for Psyr_5042 in Pseudomonas syringae pv. syringae B728a

Annotation: General substrate transporter:Major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 25 to 48 (24 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 123 to 148 (26 residues), see Phobius details amino acids 160 to 183 (24 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details amino acids 249 to 272 (24 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details amino acids 341 to 363 (23 residues), see Phobius details amino acids 376 to 399 (24 residues), see Phobius details amino acids 407 to 425 (19 residues), see Phobius details PF00083: Sugar_tr" amino acids 26 to 237 (212 residues), 76 bits, see alignment E=2.9e-25 PF07690: MFS_1" amino acids 65 to 391 (327 residues), 80.9 bits, see alignment E=8.9e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_5042)

Predicted SEED Role

"L-Proline/Glycine betaine transporter ProP" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLA3 at UniProt or InterPro

Protein Sequence (429 amino acids)

>Psyr_5042 General substrate transporter:Major facilitator superfamily (Pseudomonas syringae pv. syringae B728a)
MSSVPPSSTQPARPLTRSDYKTLSLSALGGALEFYDFIIFVFFAAVVGKLFFPVDMPDWL
RMMQTFGIFAAGYLARPLGGIIMAHFGDLLGRKKMFTLSIFMMAVPTLIMGLLPTYAQIG
MWAPILLLLMRVIQGAAIGGEVPGAWVFVSEHVPARRVGYACGTLTAGLTAGILLGSLVA
TAINSIYTPVEVSDYAWRIPFLLGGVFGLMSVYLRRLLHETPVFAELQLRKALAEEVPLK
AVLRDHRGAVALSMLMTWLLSAGIIVVILMTPTILQTIYGFPAATALKANSLAIVFLSVG
CIAAGALADRFGAGWVFLLGSAGLLISSWTFYHILGSHPEVLFPLYAVTGLFVGTIGAVP
YVMVKAFPPVVRFSGLSFSYNLAYAIFGGLTPMVVTFMLKSSPMGPAWYVAILCGLGMAI
GAFLLSRKR