Protein Info for Psyr_4990 in Pseudomonas syringae pv. syringae B728a

Annotation: YD repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 867 TIGR01643: YD repeat (two copies)" amino acids 39 to 73 (35 residues), 21.5 bits, see alignment (E = 2.5e-08) amino acids 101 to 137 (37 residues), 20.7 bits, see alignment (E = 4.6e-08) amino acids 140 to 178 (39 residues), 26.4 bits, see alignment (E = 7.3e-10) amino acids 159 to 199 (41 residues), 28.3 bits, see alignment 1.8e-10 amino acids 201 to 241 (41 residues), 19.6 bits, see alignment 9.7e-08 amino acids 323 to 358 (36 residues), 20.9 bits, see alignment (E = 4e-08) PF05593: RHS_repeat" amino acids 323 to 358 (36 residues), 28.4 bits, see alignment (E = 1.7e-10) PF03527: RHS" amino acids 637 to 671 (35 residues), 67.2 bits, see alignment (E = 9.1e-23) TIGR03696: RHS repeat-associated core domain" amino acids 664 to 739 (76 residues), 93.7 bits, see alignment E=7.9e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4990)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLF5 at UniProt or InterPro

Protein Sequence (867 amino acids)

>Psyr_4990 YD repeat protein (Pseudomonas syringae pv. syringae B728a)
MPDDNWLALKYDHLSRLVEETDPLGRKITYKHHLATTLVTQTTFPDGSTWKARYDSRGNL
LVETDALGNKTEYLNSEDGLPHTIIDATYKSKYLWWNSLAQVVHFQDCSGKDTYYRYDDR
GHLIAVTDALNNTTTLERKPDGEVLRINHPDGSVESFTYNALGQVLSHTDGKGQITRLSR
NARGLPTRREDAKGKAVAYQYDKAIRLTALVNENNATYNFVYDNADRLIEEKRIDNLTRR
FSYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAKLNDDARQNYAYDDGDRLLS
IERKPTDTGRKLGVAAEKLEFAYDLLGRLVKETTSQGALAYEYDPLSNLTTLTLPTGQHL
NHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDSMGRKAWQYATTLP
AEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLA
RNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNLIETVVGIV
RWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGQTDHKRFLWQGLR
MLREESPGQSSLYIYEPGSYAPLARVDEKEGEVENTVYYFHTDQIGTPLEMTDAEGQIVW
QAKYRAWGAVEKLVVNKVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLG
GFNLYQYAPNTNGWIDPLGWTGLDASGRPLSSSQYSVWSSVEMPTEIHGSGRSTHFKYAN
EELYNRTLKSPELKSALPPEVVEHIQPGPRGGFSDRSPPNHSWHHNAQSPKDIELMPRAQ
HKAPGPVQNSLHPNQQGGFKKLQSSAC