Protein Info for Psyr_4982 in Pseudomonas syringae pv. syringae B728a

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 35 to 52 (18 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4982)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLG3 at UniProt or InterPro

Protein Sequence (242 amino acids)

>Psyr_4982 hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MIDSDKLKKFSWFLFVFLVSILALGLSSFKYFLPVYFTIFLCAITWTLYLVYVCESFTLY
MTSLLVTIASIFCSFASLSAYLVATKFWGKASAPALMAGLAPFGITSLTYLLLVNGKPSF
HPFEYDGIKVQPRPEKKQKKTIAYNPLLIAGATTLAASIFIKAAGALTAGMVAMFGLTTF
SIALLFHARHIIRGLRDLRLHQKTMPTPYTFMQIDEIRKARRRWWLSRLFQWVASRRKSP
GA