Protein Info for Psyr_4848 in Pseudomonas syringae pv. syringae B728a

Annotation: SdiA-regulated

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details PF06977: SdiA-regulated" amino acids 64 to 315 (252 residues), 327.3 bits, see alignment E=5.1e-102

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4848)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLU7 at UniProt or InterPro

Protein Sequence (317 amino acids)

>Psyr_4848 SdiA-regulated (Pseudomonas syringae pv. syringae B728a)
MAWYQSRPLNPSESPLMRRSTRSLVLLLALVPLIVIFVIANQRYRYVESALFDWQVFWQS
DSLHSIGLDQYRVVTEAQVIDGLQDDVSGLSYDPDRKSLFTVTNQNPELVELSLDGRVLR
RIPLVGFGDAEAVEYISPGTYVISDERRLRLIQIHVDDNTKSLDAAQAEQLTLGITASGN
KGYEGLAYDSVGKRLFVARERDPVQIIEVRGFPRTNSEAPGNLQVISNSKRDGRLSVRDL
SSLQFDETSGHLLALSDESKRILELDTSGHPIGSGSLAKGAMGLSKDVPQAEGMAMDAEG
ALYLVSEPNLFYVFRKP