Protein Info for Psyr_4662 in Pseudomonas syringae pv. syringae B728a

Annotation: Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1346 transmembrane" amino acids 641 to 662 (22 residues), see Phobius details amino acids 678 to 700 (23 residues), see Phobius details amino acids 877 to 901 (25 residues), see Phobius details amino acids 925 to 950 (26 residues), see Phobius details amino acids 1132 to 1150 (19 residues), see Phobius details amino acids 1165 to 1190 (26 residues), see Phobius details PF00501: AMP-binding" amino acids 37 to 382 (346 residues), 243.2 bits, see alignment E=4.3e-76 TIGR01733: amino acid adenylation domain" amino acids 58 to 458 (401 residues), 391 bits, see alignment E=6.1e-121 PF13193: AMP-binding_C" amino acids 442 to 517 (76 residues), 31.1 bits, see alignment 3.8e-11 TIGR02353: non-ribosomal peptide synthetase terminal domain of unknown function" amino acids 640 to 1341 (702 residues), 1000.6 bits, see alignment E=3.9e-305

Best Hits

Predicted SEED Role

"FIG00956083: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZMD3 at UniProt or InterPro

Protein Sequence (1346 amino acids)

>Psyr_4662 Amino acid adenylation (Pseudomonas syringae pv. syringae B728a)
MNNLNLSTLGQNEQSLDVIYGPIQHELLREEVLADLLEASARRNPQHVALIFGERQISYG
ELDRQADQVASALIGTGVRPGHIVGLWLPRGIELLVMQAGIAKAGAAWLPLDQDTPVERL
QICLDDASAVGLVSCDALMPVLADTGLKVWTAEHLLTPTDAALVRRSGVLPDHPAYVIYT
SGSTGKPKGILISQRSICHFLRSENAILGIRANDRVYQGFSVAFDMSFEEIWIAYLVGAT
LWIGPKETSGDPETLPRLLNEQRISVLHAVPTLLALFSEDVPGLRLINLGGEMCPESLVD
RWATPNRQMFNTYGPTEATVSASLARLSRGRPVSIGTPLPNYGLLVIANDPAVGSSLAPS
LLPRGEVGELCIIGPGLAEGYLGRPDLTEEKFLPNPWSTGYHDARLYRTGDLARIDHDGQ
VQCLGRADDQVKIRGFRVELGEIEALLAQQPGVGTVAVLLRNEAGVDQLIAYLVSDTSTP
SAFTSQLRKTLQAQLPPYMVPGHFELLDSMPRLTSGKIDRKALKVLPLTVDAKAASAESD
VAQTEGEIALFAALSTLFPGMPIRRDADFFTDLGGHSFFAARLASALRANPRFAQVTVRD
IYQHRRIGAIAEVLDQAPQEMDAPVDWTPPSAWRRWRCGVAQALALPVMVSLRMTQWLAP
FFTYHLLTGSPDDSVTLATLASISVFLIATVLQFFIALAAKWLIVGRLKPGIYPLWGVTY
FRWWAADRMVDSAPTYLLSGSSLYPLWLRALGAKIGQDVIIGGATVRAHDLLEIGDGVSV
GNGVSFENARVERGQLHLGRIALQDNACVGSYVIMEGNTAVGPWGHLEAQSAMADGREVP
AGRIWQGSPARDVGAFDTLGQPARPVTSPARLRAEKLFFAFGVLLIATLFFIPVFPTFFL
IDWFDTQNVLPWFEGSGPLGQLARYFLLAFPASAVLIVATVLASAALRWLVFPRLKPGRY
EVHSNTYCAKWLISQIQEASLNVLSGIYATVYSPFWYRLLGAKVGRDAEISSAQGVIPEM
LTLGDETFIADAVMLGDERIDGGWMTMQPTVVSHRSFVGNGGYIADGTVLPENVLIGVHS
CAPHNSKIVDGDTWLGSPPIHLPAREQVSGAPESLTFKPSPLRRLARGLVEGVRIVTPHA
VVIAVGYTVMLDLMPLADDERWGAVLAYLAVIGMAYSVGNFLLIVALKWLVMGRYRKRAD
PMWTPFVWLSEGITSLYEGMAAPNFMRYLRGTPWLPLAFNVLGCKIGRGVYMDTTDITEF
DCVSIGADSELNAGACPQTHLFEDRVMKIDHVSIGKRVYMGPRSAVLYSAVVGNDAHLGA
LTLVMKGEHIPAGSRWAGCPASPDRA