Protein Info for Psyr_4659 in Pseudomonas syringae pv. syringae B728a

Annotation: type III effector HopAB1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 516 PF16847: AvrPtoB_bdg" amino acids 239 to 328 (90 residues), 61.9 bits, see alignment E=6.5e-21 PF09046: AvrPtoB-E3_ubiq" amino acids 393 to 515 (123 residues), 171.1 bits, see alignment E=1.2e-54

Best Hits

Swiss-Prot: 100% identical to HPAB1_PSEU2: Effector protein hopAB1 (hopAB1) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: K13452, effector protein HopAB [EC: 6.3.2.-] (inferred from 100% identity to psb:Psyr_4659)

Predicted SEED Role

"FIG00966229: hypothetical protein"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.3.2.-

Use Curated BLAST to search for 6.3.2.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZMD6 at UniProt or InterPro

Protein Sequence (516 amino acids)

>Psyr_4659 type III effector HopAB1 (Pseudomonas syringae pv. syringae B728a)
MSGINGAGPSNFFWRWRADDEPVTERERDSSSGANLTNSPQLRPESPTVSGRRLLRSNAL
SRQTREWQETTSASAERATPPVEPRQPPEAQPAERIVAERIVQELVRAGANLNNVRTMLR
NVMDNNAVAFSRVEWNILLQHFPDMHTNGISSDSVLANELRQTLRQVVHQQRTQRALAPI
LSPAPSRPVASSSRSSQRTLLGRFTGWMAPRQTSSSSQATSSTSVDRHPQDLNQLESLRL
ADAERRNRSANQTDTDEALRRLTQAGVDMERLSTSLGRYIHSFQPAPPDLRRLLESVGID
PDIPEELTLVNNPVLNLNVALNRMLASRQATTESSSVFPSRAGDTRVRTLPVMPEREDNE
NNVAYGVRLLRLNPEAEVERVVEAFITDPSSRPEVVADIHAVLRSITSQFRQLRTISKAD
AESQDFRDAADYPDDPTSCLFGEDLSLSNPHQQVIGLAGESTDILQPYSQEGNKALRFMD
MKKLAEHLASKPVHPMNRDRLDDKNIAGYAFRVVPD