Protein Info for Psyr_4572 in Pseudomonas syringae pv. syringae B728a

Annotation: Short-chain dehydrogenase/reductase SDR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00106: adh_short" amino acids 4 to 193 (190 residues), 150 bits, see alignment E=9e-48 PF08659: KR" amino acids 6 to 168 (163 residues), 39.3 bits, see alignment E=1e-13 PF13561: adh_short_C2" amino acids 9 to 194 (186 residues), 99.4 bits, see alignment E=3.7e-32

Best Hits

KEGG orthology group: K07124, (no description) (inferred from 100% identity to psb:Psyr_4572)

Predicted SEED Role

"Oxidoreductase, short chain dehydrogenase/reductase family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZMM0 at UniProt or InterPro

Protein Sequence (258 amino acids)

>Psyr_4572 Short-chain dehydrogenase/reductase SDR (Pseudomonas syringae pv. syringae B728a)
MTRYALITGASSGIGLAMAEALARRGRNLILVARQRDLLETIALELTQRFGVEVLFRACD
LGEPLRLSGFLLELEDGAHQIDLLVNAAGIGTCGPFLAQDWSAEQDLIDLNILALTRLCH
TVGNLMAIQGGGQILNIASVAAFQPGPWMSTYYASKAYVLHFSEGLREEVKKAGVKVSVL
CPGPTRTAFFRTAQLQVNVDNLMSPEEVALYTVRALAKNRAVITPGFGNRLWTLSPRLVS
RWLARQISGYINKKYCPH