Protein Info for Psyr_3921 in Pseudomonas syringae pv. syringae B728a

Annotation: membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 transmembrane" amino acids 10 to 23 (14 residues), see Phobius details amino acids 38 to 59 (22 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 142 to 160 (19 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 230 to 247 (18 residues), see Phobius details amino acids 275 to 293 (19 residues), see Phobius details amino acids 314 to 334 (21 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details PF10129: OpgC_C" amino acids 5 to 365 (361 residues), 410.8 bits, see alignment E=2.3e-127

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3921)

Predicted SEED Role

"OpgC protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPH1 at UniProt or InterPro

Protein Sequence (376 amino acids)

>Psyr_3921 membrane protein, putative (Pseudomonas syringae pv. syringae B728a)
MNNGRDHRIDFFRGLALIFIFWDHVPDNPLAQLTVRNFGFSDAAEIFVFLAGYASILAYG
RIARRDGMLVAGVRILRRTWVLYVVHIFLLTLLMGIVFVANNHVETRDMVQQMGLEYFVG
NPQQALADELLLRFKPNLTDPLPLYIVLLLTLPLSLPLMLRKLEVAVGLSIALYLMVPLL
GWNLRAYEGGGVWYFNPVAWQLLFVLGGACALRSETATTAERPPLRQQPLFMLAAIYVLI
ACILTFSEKWPGLHAALVSSLHLESLYPISKTDLAPVRLLHFLALVYVVARLLPTSSTWL
ENWPARQTCRMGRYSLEVFCLGVLLAPLADMANALAGDTWPMQVTTAIVGLGLMMLMANG
LELNKRLGTSPHLLPT