Protein Info for Psyr_3750 in Pseudomonas syringae pv. syringae B728a

Annotation: Protein of unknown function UPF0270

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 92 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF06794: UPF0270" amino acids 18 to 84 (67 residues), 92.4 bits, see alignment E=8e-31

Best Hits

Swiss-Prot: 100% identical to Y1506_PSE14: UPF0270 protein PSPPH_1506 (PSPPH_1506) from Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)

KEGG orthology group: K09898, hypothetical protein (inferred from 99% identity to pst:PSPTO_1630)

Predicted SEED Role

"FIG00953242: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPZ1 at UniProt or InterPro

Protein Sequence (92 amino acids)

>Psyr_3750 Protein of unknown function UPF0270 (Pseudomonas syringae pv. syringae B728a)
MRGTAVLLSPLIDTRTAMLIPYDQLEPDTLTRLIEDFVTREGTDNGDETPLQTRVLRVRH
ALTKGQAVIFFDLESQQCQLMLKHDVPKEFFE