Protein Info for Psyr_3598 in Pseudomonas syringae pv. syringae B728a

Annotation: Binding-protein-dependent transport systems inner membrane component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 62 to 80 (19 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 194 to 211 (18 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 102 to 273 (172 residues), 105.8 bits, see alignment E=1.1e-34

Best Hits

Swiss-Prot: 47% identical to SSUC_ECOLI: Putative aliphatic sulfonates transport permease protein SsuC (ssuC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to psb:Psyr_3598)

MetaCyc: 47% identical to aliphatic sulfonate ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-56-RXN [EC: 7.6.2.14]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZQE2 at UniProt or InterPro

Protein Sequence (285 amino acids)

>Psyr_3598 Binding-protein-dependent transport systems inner membrane component (Pseudomonas syringae pv. syringae B728a)
MSDTTLNPAEPGFLVVNKPEQGRVSQSGRPRWQVPGFVLRLLSPLVLLLLWELASQTGLL
PVRVIAAPSQIGGTLWSMIVSGELAHHLWVSLQRALLGLSIGVSIGVVAALVTGLSRRGE
IVLDSPMQRLRTIPSLALVPLFILWFGIGEFTKVALIVMGTTFPVYLNLFSGIRNIDPKL
IEAANTLGLSRRELIWHVILPGSLPAFFVGLRYSLGISWLALVFVEQINTTAGIGYLASD
ARDFMRTDVIVICLLIYSVLGLVIDAIIRTLERYALAWRPTFVRH