Protein Info for Psyr_3583 in Pseudomonas syringae pv. syringae B728a

Annotation: condensin subunit ScpB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 TIGR00281: segregation and condensation protein B" amino acids 9 to 177 (169 residues), 111.9 bits, see alignment E=1.4e-36 PF04079: SMC_ScpB" amino acids 13 to 172 (160 residues), 166.7 bits, see alignment E=1.6e-53

Best Hits

KEGG orthology group: K06024, segregation and condensation protein B (inferred from 100% identity to psb:Psyr_3583)

Predicted SEED Role

"Segregation and condensation protein B" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZQF7 at UniProt or InterPro

Protein Sequence (255 amino acids)

>Psyr_3583 condensin subunit ScpB (Pseudomonas syringae pv. syringae B728a)
MNLNEPRELAPLLEAFLLASGKPQTLERLYELFEEGERPEPPVFKKALEVLRKSCEGRAF
ELKEVASGYRLQIRDRFSPWVGRLWEERPQRYSRAMLETLALIAYRQPITRGEIEDVRGV
AVNSHIVKTLLEREWIRVVGYRDVPGKPAMFATTKGFLDHFNLKSLDELPPLADLREMET
EPVLDFEEAPVPAHLQALADASLDPDAEPEAPRDETSFRSLLVELDSMEQGLKTDFDDLL
RAEPEPEDDKGDDEV