Protein Info for Psyr_3502 in Pseudomonas syringae pv. syringae B728a

Annotation: membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1132 transmembrane" amino acids 703 to 725 (23 residues), see Phobius details amino acids 746 to 767 (22 residues), see Phobius details amino acids 805 to 825 (21 residues), see Phobius details amino acids 843 to 863 (21 residues), see Phobius details amino acids 870 to 894 (25 residues), see Phobius details PF20249: VasX_N" amino acids 27 to 177 (151 residues), 94 bits, see alignment E=5.1e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3502)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZQN8 at UniProt or InterPro

Protein Sequence (1132 amino acids)

>Psyr_3502 membrane protein, putative (Pseudomonas syringae pv. syringae B728a)
MTDKSGTHTQRRAATFAKTPATATSLCPFRGPDIAIVPVRYALDRSRYDTAPEKLKPLLK
GSRWAVMPKLKTRSYTLRQLYDGYVYVYDETAGTFHEYVSSAADGHLSRIIWTDAQIGSD
QRSGGSDAKPFLLYPRSNLLRIAFSAQQWTWRICEHLRSNPASRTSWMKALDLKRYCMTM
AEPDTLPLNRIAEAVADIDKEYVVDDDRFSDSAIPAARPPSDSDEVKALFSPIGADVFWQ
GSVEDKNSSLLIALDDPLAIFNDLGMQLAADQAAYRNWQAEHEHKIQIAQTVTTLCGAES
EPEKLPASVRGNAALTHQYLSDVEAYFEQCMFEQEQIGNNTAPGGVLLLPDIFKSPQMRR
SLEMRYGSAPSDDALQAWKERHKWRREVDLSGARQYLQQHLPTGDTLLKQVRDTQSDFQQ
WTTHLGTEPLKLFVDTAHPESLLYLQTVMLNLQIIYAQDNAASAWLAEQEANDSSLFGTL
RYGFSPALKHALHQEANALLNGLGDITNLATRIGELNGTLNHQGFAEKPWMKALKQPVQD
TFKALGQLASDAGKATFESILLAWVPIDSRLAVGKQQNIVALIRTLLIGQILLDSKARIA
IDHTMLAKLKNWISEWQVLNKQISDTRRSWLYPTAYTPRKSIASHLRTLEEKLRRHELSM
PALLDFQNNQYAKQLQDEIRLHFQSGKAITKEWLSTARRWLDGLGGIAGSITWGVIMLNF
INTAFTYRDLTRDGNFSTKDIGKVTYGLGYSFNLLMAVFVEAPWAVISTAKPLSIGGYDI
GILDKSAAYWKARGNAVWGDAIRGFRVSMVAMGGFGLAAVTLEIFDVADDFYAAKTPEEK
NVIIVKGISVFTMGVGSTFQLMGGLSPASAFATVAMSSWFSVALLIIGSIYLFTTMTLNY
FKQDIVGWWLRKCCWSRTLDYRYAETAKGEHEEVRALMEIQLSPQVHVKSTEHYENRYLG
KGDHYSVAVQNGVGVQVHLPNLIRGQSVHFNIVSSKRPWGVLPVEKIDDPLHQAFLDRGQ
FREVEQFGKLTNTPSGKASEDLTYPLMPPENEDLIWETWVPLDKDATYIELQIWYPANLL
NPGEDDRSYLFQMELGPRGDTAIDGLAAVELEVKASNRAGTLTLEVAEGTPL