Protein Info for Psyr_3475 in Pseudomonas syringae pv. syringae B728a

Annotation: Flagellar basal body rod protein:Protein of unknown function DUF1078

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 TIGR03506: flagellar hook-basal body protein" amino acids 4 to 136 (133 residues), 167.6 bits, see alignment E=6.6e-53 amino acids 148 to 244 (97 residues), 98.2 bits, see alignment E=8.3e-32 TIGR02488: flagellar basal-body rod protein FlgG" amino acids 4 to 261 (258 residues), 376.9 bits, see alignment E=5.1e-117 PF00460: Flg_bb_rod" amino acids 5 to 35 (31 residues), 39.3 bits, see alignment 7.1e-14 PF22692: LlgE_F_G_D1" amino acids 96 to 159 (64 residues), 95.8 bits, see alignment E=2.1e-31 PF06429: Flg_bbr_C" amino acids 217 to 260 (44 residues), 72.6 bits, see alignment 2.2e-24

Best Hits

Swiss-Prot: 59% identical to FLGG_SALTY: Flagellar basal-body rod protein FlgG (flgG) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02392, flagellar basal-body rod protein FlgG (inferred from 100% identity to psp:PSPPH_3401)

Predicted SEED Role

"Flagellar basal-body rod protein FlgG" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZQR5 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Psyr_3475 Flagellar basal body rod protein:Protein of unknown function DUF1078 (Pseudomonas syringae pv. syringae B728a)
MLPALYVAKTGLAAQDTNLTTISNNLANVSTTGFKSDRAEFQDLLYQIKRQPGAQSTQDS
ELPSGLQLGTGVRIVGTQKNFTAGSLQTTNNPLDLAVNGRGFFQVTQPDGTIAYSRDGTF
HLDANGQIVTANGYALEPAIVVPQNAQTFTVGQDGTVSVTLAGATATPQIIGNIQTADFI
NPAGLQAIGGNLYLETGSSGAPQIGTPGLNGLGPTLQNTLENSNVSTVEELVNMITTQRA
YEMNSKVISTADQMLQNLTQNL