Protein Info for Psyr_3355 in Pseudomonas syringae pv. syringae B728a

Annotation: PAS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 646 PF08448: PAS_4" amino acids 23 to 109 (87 residues), 25 bits, see alignment E=3.7e-09 amino acids 140 to 250 (111 residues), 58 bits, see alignment E=2.1e-19 PF00512: HisKA" amino acids 274 to 338 (65 residues), 40.1 bits, see alignment E=6.4e-14 PF02518: HATPase_c" amino acids 382 to 501 (120 residues), 74.3 bits, see alignment E=2.1e-24 PF00072: Response_reg" amino acids 527 to 638 (112 residues), 58.2 bits, see alignment E=1.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3355)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR35 at UniProt or InterPro

Protein Sequence (646 amino acids)

>Psyr_3355 PAS (Pseudomonas syringae pv. syringae B728a)
MDEGFCIIEFLDGPHGPLSDYIHVEANPAYEYHAGISNVVGKKLREMVREEADGWVEFYG
DVLRTGKPIRFERELVATGRYLALTAFRIEPASRRQVAVLFQDITERKRAELELKQLNET
LEARIVEAVAERNVLADVVNGTNAIIHVVDCNFRWMAINGAALREFERLFGIRPQVGDSM
LDLLDDRPQSKADLERRWTRALAGEEFAESVSFSDSNDPASHFEIRYSTLRNAQGQAIGA
YLFAYDVSERLREQERLSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKT
RVSQGRFNELDRYLGAAQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRR
TVGPHITLEVVTSVGLWSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERG
SQGRDLIPGQYLSLCVSDTGTGMSPEVINRVFDPFFTTKPLGQGTGLGLSMVYGFVRQSG
GQVRIYSEPGQGTNMCLYLPRHYLGAPEEIEAADACGSAPAQTERTVMIVDDEPTIRMLV
AEVLEDQGYIPIEAGEGASALKVLESDARIDLLVTDVGLPGGMNGRQLADAARIIRPDLK
VLFITGYAENAIIGNGHLDPGMWVLTKPFTMEAFASRIYEMIERED