Protein Info for Psyr_3228 in Pseudomonas syringae pv. syringae B728a

Annotation: Glycosyl transferase, group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 PF13579: Glyco_trans_4_4" amino acids 16 to 205 (190 residues), 50.6 bits, see alignment E=7e-17 PF13439: Glyco_transf_4" amino acids 16 to 205 (190 residues), 48.8 bits, see alignment E=2.1e-16 PF00534: Glycos_transf_1" amino acids 225 to 373 (149 residues), 90 bits, see alignment E=3.4e-29 PF13692: Glyco_trans_1_4" amino acids 227 to 359 (133 residues), 89.5 bits, see alignment E=6.5e-29 PF20706: GT4-conflict" amino acids 291 to 339 (49 residues), 30 bits, see alignment 6.7e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3228)

Predicted SEED Role

"glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRG2 at UniProt or InterPro

Protein Sequence (401 amino acids)

>Psyr_3228 Glycosyl transferase, group 1 (Pseudomonas syringae pv. syringae B728a)
MKILFINSLYAPDIGGGAEIILQRTVEGLQQRGHSVAVLATTDQPGLQLAEVNRVKVYRA
GLLNRYWHFMAQRPGRLARFAWHWRDRYNADMREYVERVMELEQPELVVCHNLTGWSVSA
WDQITQADCPIVQVLHDFYLLCPASTMFRKGKSCQRQCTTCTRLRSHHAQQSEQVSAVVG
VSRFMLDTLQAQGYFKGARGYVVHNASPFTPAPREQPGAPVDTAPLRFGYLGTLSTNKGL
EWLIEQFQRLPFKATLQIAGRGQPSDEKRFRAMVTSPDISFVGLQKPDNFYRQIDVAIVP
SMWNEPFGMVAVEACAHSLPVIASRMGGLTEIIQEPLNGLLCSPDDPDSLGLAMLRLHQQ
PELLARLGSQARSSVASLMNLDLMLDQYESIFAQTLQDRST