Protein Info for Psyr_3179 in Pseudomonas syringae pv. syringae B728a

Annotation: DNA translocase FtsK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 801 transmembrane" amino acids 25 to 44 (20 residues), see Phobius details amino acids 68 to 93 (26 residues), see Phobius details amino acids 113 to 135 (23 residues), see Phobius details amino acids 164 to 187 (24 residues), see Phobius details PF13491: FtsK_4TM" amino acids 21 to 193 (173 residues), 150.2 bits, see alignment E=9.5e-48 PF17854: FtsK_alpha" amino acids 307 to 407 (101 residues), 113.1 bits, see alignment E=1.3e-36 PF01580: FtsK_SpoIIIE" amino acids 417 to 627 (211 residues), 251.1 bits, see alignment E=1.8e-78 PF09397: FtsK_gamma" amino acids 735 to 795 (61 residues), 88.5 bits, see alignment 3.7e-29

Best Hits

Swiss-Prot: 100% identical to FTSK_PSEU2: DNA translocase FtsK (ftsK) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: K03466, DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family (inferred from 100% identity to psb:Psyr_3179)

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q9Z3U1 at UniProt or InterPro

Protein Sequence (801 amino acids)

>Psyr_3179 DNA translocase FtsK (Pseudomonas syringae pv. syringae B728a)
MKKSTPAPSAVPLWRQQLHYRLKEGALIAFGALCLYLMMALLTYDQSDPGWSHTSSNAAQ
VQNAAGRAGAFCADILFMILGYFAYIFPLLLAIKAWQVFRHRHEPWQWSGWLFSWRLIGL
VFLILAGAALAHIHFHFSAGFPGSAGGVLGEVLGDLAKKALNIQGSTLLFIALFLFGLTV
FTDLSWFKVMDVTGKITLDLFELFQGAANRWWTARAERKQMVAQLREVDMRVNDVVAPVA
PDRREQAKARERLVEREASLSKHMTEREKHVPAVIAPAPSKPVEPSKRVMKEKQAPLFVD
SAVEGTLPPISILDPAEKKQLNYSPESLAAVGHLLEIKLKEFGVEVSVDSIHPGPVITRY
EIQPAAGVKVSRISNLAKDLARSLAVTSVRVVEVIPGKTTVGIEIPNEDRQIVRFSEVLS
TPEYDNAKSPVTLALGHDIGGKPVITDLAKMPHLLVAGTTGSGKSVGVNAMILSILFKSG
PEDAKLIMIDPKMLELSIYEGIPHLLCPVVTDMKDAANALRWSVAEMERRYKLMAKMGVR
NLSGFNQKVKEAQDAGEPLADPLYKRESIHDEAPLLSKLPTIVVVVDEFADMMMIVGKKV
EELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRMAFQVSSKIDSRTIIDQGG
AEQLLGHGDMLYMPPGTSLPIRVHGAFVSDEEVHRVVEAWKLRGSPDYNDDILAGVEEPG
SGFDGGSGEGSEDSESDALYDEAVKFVLESRRASISAVQRKLKIGYNRAARMIEAMEMAG
VVTSMNTNGSREVLAPGPVRD