Protein Info for Psyr_3140 in Pseudomonas syringae pv. syringae B728a

Annotation: Phospholipase/Carboxylesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF02230: Abhydrolase_2" amino acids 36 to 236 (201 residues), 97.1 bits, see alignment E=4.3e-31 PF01738: DLH" amino acids 110 to 224 (115 residues), 37.5 bits, see alignment E=5.9e-13

Best Hits

KEGG orthology group: K06999, (no description) (inferred from 100% identity to psb:Psyr_3140)

Predicted SEED Role

"phospholipase/carboxylesterase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRQ0 at UniProt or InterPro

Protein Sequence (240 amino acids)

>Psyr_3140 Phospholipase/Carboxylesterase (Pseudomonas syringae pv. syringae B728a)
MLKFFAALLFAVTAMAQAQDTLHTDLPLDYLAQTNVDKPDQPLVIFIHGYGSNAADLFGL
KEELPADYNYVSVQAPMELRADSYKWFTQKPGVADYDGVTEDLKSSGTRLAAFIGKATEK
FHTQPGKVFLIGFSQGAMMSYEVALRQPKLVGGFAALSGRLLPVVKSEVKTSDDLKALSV
FIGHGTQDRQVAYASAPQAEATLKTLGLTPQLHAYEGMGHSINEAEVMDLAAWLKQSNRQ