Protein Info for Psyr_3063 in Pseudomonas syringae pv. syringae B728a

Annotation: Major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 113 to 131 (19 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 205 to 223 (19 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 272 to 296 (25 residues), see Phobius details amino acids 309 to 328 (20 residues), see Phobius details amino acids 336 to 354 (19 residues), see Phobius details amino acids 365 to 387 (23 residues), see Phobius details amino acids 408 to 429 (22 residues), see Phobius details amino acids 477 to 497 (21 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 409 (387 residues), 140.4 bits, see alignment E=7.1e-45 PF00083: Sugar_tr" amino acids 50 to 190 (141 residues), 24.9 bits, see alignment E=9.2e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3063)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRX5 at UniProt or InterPro

Protein Sequence (521 amino acids)

>Psyr_3063 Major facilitator superfamily (Pseudomonas syringae pv. syringae B728a)
MTTAHRVQTQPTAGRWGQLLAACLTGILIPLCFTGPAVVLPSINQALGGSAVELTWVINA
YILTYGSAMMAAGSLTDIYGRKRVWLIGLAIFVLSTFAIPAASSVVQIDLLRLVQGLGGA
AAFAGAMSSLAQTFHGAERTRVFSLLGTTFGIGLAFGPLAAGSLVDSAGWKWSFHATALI
GVAGFLLVLFSATESKDPDATGMDWPGAISFTAALTLFTYAILLAPEEGWTDPLVMGGII
GSLLLFWVFIAVERRIARPMLDLSLFKSARFVGVQILAATPAFFFVVLIIMLPARFIGID
GLSALETGQMMTALAAPLLIVPLLAAQLARRFTSGLLSGVGLLLVAAGLLWLALALDSGA
IRTALLPMALIGIGIGLPWGLMDGMAISVVEKERAGMATGIFNAVRVSADGIAIAIAGAL
LATFIQWGLFDALKGVSPEVVTEAANRAALGDLHNATSLLSGQSALLHQEYVNAFRNLLF
ILSAATVLTAVAVFALLGRVRAHEEPPIEPSDTLELAGETK