Protein Info for Psyr_3021 in Pseudomonas syringae pv. syringae B728a

Annotation: Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1160 PF01558: POR" amino acids 717 to 911 (195 residues), 66.7 bits, see alignment E=2.7e-22 PF20169: DUF6537" amino acids 939 to 1137 (199 residues), 232.7 bits, see alignment E=4.1e-73

Best Hits

KEGG orthology group: K04090, indolepyruvate ferredoxin oxidoreductase [EC: 1.2.7.8] (inferred from 54% identity to azc:AZC_0699)

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.7.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZS17 at UniProt or InterPro

Protein Sequence (1160 amino acids)

>Psyr_3021 Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase (Pseudomonas syringae pv. syringae B728a)
MSLADIRLDDKYRLATGNLYLTGTQALTRLPMLQKQRDEAQGLNTAGFISGYRGSPLGNL
DKSLWDAKDYLRQNAIHFQPGINEELAATAVWGSQQVNLFPHGKYDGVFALWYGKGPGVD
RCGDVFKHGNSAGVAANGGVLILAGDDHGCKSSTIAHQSEHAFIASMIPVLNPSNVQEIL
DYGIIGWELSRYSGCWVAMKTIAENVDSSAVVEVDPLRIKTRIPDDFDLPEGGLHIRWPD
PPLAQEARLNTYKIYAARAFARANQLNKVVIDSAQPRLGIITTGKSYLDVRQALEELGID
QELCEKVGIRVLKVGMSWPLEPVSVHDFAEGLDEILVVEEKRSVIEDQLTGQLYNWPVER
RPVVVGEFDEQGRSLLPNLSELTPAMIARVIAKRLAPFYSSPQIEARLQFLSDKEQALQA
PLFNTQRTPHFCSGCPHNTSTKVPEGSRALAGIGCHYMTIWMDRETDTFTQMGGEGVTWI
GQAPFTETPHVFQNLGDGTYFHSGHLALRAAVASKVNITYKILYNDAVAMTGGQPIDGVL
RVDQLSRQVFNEGVLRIALVSDEPDKYPSREDFAPITTFHHRRDLDSVQRELREFKGVSV
IIYDQTCATEKRRRRKRGTMPNLEKRALINPAVCEGCGDCGVKSGCLSVLPKETAQGRKR
EIDQSACNKDFSCVEGFCPSFVTVHGGKLRKPALPKQVEAFARLPEPVLPSLDRPFNILL
PGVGGTGVTTVGAMLGYAANLEGKGCSVLDQAGLAQKFGPVVSHIRIAARQEDLFAVRIA
AGEAHLLLGCDLLVAAGPDAIAKLDSKISHAVVNSQQTPTAEFTRNPDAVFPAEAMKQTI
IEAVGAAKTHFVEATSLATRLMGDSIASNLFMLGYAFQLGLIPLTSAAIEKAIELNGVAV
NLNQQAFLWGRRTAHDPAAVEAFVNPQDKVSEPQSVDLDQRIQSNVDALKQYQNAAYAKR
YLALVQRVRDSESRAFPGQQPTLTEAVAFNYFKLLAYKDEYEVARLYSNGEFTRQLQAQF
EGDYRLEFHLAPSWLAKRDPHNGLPRKRSFGPWMLRAFDVLARFKFLRGTALDPFGRSLE
RQQERALIDRYVSDVELILQHLQAQNRHTALSLARLPERIRGYGYIKESAMKAAAVQADI
LRKSLESGEVAAPKLYEAAA