Protein Info for Psyr_2858 in Pseudomonas syringae pv. syringae B728a

Annotation: 2OG-Fe(II) oxygenase superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF14226: DIOX_N" amino acids 6 to 137 (132 residues), 97.6 bits, see alignment E=8.1e-32 PF03171: 2OG-FeII_Oxy" amino acids 203 to 291 (89 residues), 66.5 bits, see alignment E=2.3e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2858)

Predicted SEED Role

"oxidoreductase, 2OG-Fe(II) oxygenase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZSH8 at UniProt or InterPro

Protein Sequence (337 amino acids)

>Psyr_2858 2OG-Fe(II) oxygenase superfamily (Pseudomonas syringae pv. syringae B728a)
MTLHYVPIINLAPYFSEDPDGKAAVARAVNQACRDIGFLVITEHQIPGELIDSVSRLTRQ
FFDLPLAEKRKVDRPSPEMVRGYSAVAEESLSYSLEESAPGDLKESFSIGPSDVPDEDYY
HNAQAGSHFAPNVWPAQDLLPGFKESYQAYFDAMSELAQSLMRLFALALELDECFFDDKI
DRHISMFRSLSYPDIKTEVEAGQLRASAHTDYGSLTIVRPDNALGGLQVRNRQGEWVDVP
YVENGFVVNIGDLMMQWTNDQWISTLHRVVNPPMTSEQDNRRQSLVFFHQPNYDTLIQCL
PGCLQPGATPRHAPVTSGDHLLSKFVKQTTFGGSKVA