Protein Info for Psyr_2537 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 PF07992: Pyr_redox_2" amino acids 44 to 259 (216 residues), 44.5 bits, see alignment E=5.6e-15 PF01494: FAD_binding_3" amino acids 44 to 92 (49 residues), 22.3 bits, see alignment 2.8e-08 PF13454: NAD_binding_9" amino acids 46 to 188 (143 residues), 43.8 bits, see alignment E=1.1e-14 PF13738: Pyr_redox_3" amino acids 47 to 260 (214 residues), 47.5 bits, see alignment E=6e-16 PF13434: Lys_Orn_oxgnase" amino acids 128 to 265 (138 residues), 45.9 bits, see alignment E=1.7e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2537)

Predicted SEED Role

"Nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZTE6 at UniProt or InterPro

Protein Sequence (486 amino acids)

>Psyr_2537 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MSDVNAPAGLAALEARLQQDLAWLDLPARPWVKPRISAGQAVLDVAIIGGGMAGLALSAE
LRNLGVAAVIFDQSPAGFEGPWATTARMETLRSPKQLTGPALGLPALTFRAWYEAQFGAD
GWALLDKIPRLQWAEYLRWYRKVLALDVRNEHRISRVAPRADGLIELDVVTPVQTRFLLA
RHVVLATGRDGLGGPWVPDFARQLPEHLWTHSASGLQDSWFAGKRVAVIGGGASAMDSAA
TALEAGATRVDLLIRRAELPRINKGKGVGNPGMVHGYWRLPDIWKWRIRHYLNTQQVPPP
RGSTLRVSASGKARFMLDSPVLSVEQSAAGGVWLNTPKARIEADFVVFATGFRTDFRQRP
EFAPFSAQIRVWQDRFEAPSGETDAELAVLPDLGNCFEFQEKTPGACPGLNHIHCFSYPA
ALSYGAVSGDIPAISEGSKRLAHALVGQLFNEDIALHFDTMLDYAEPELLGDEWVVSQPD
AAELRQ