Protein Info for Psyr_2533 in Pseudomonas syringae pv. syringae B728a
Annotation: FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K06911, (no description) (inferred from 76% identity to pfl:PFL_3558)MetaCyc: 69% identical to (R)-2-hydroxyglutarate dehydrogenase (Pseudomonas putida KT2440)
RXN-14932 [EC: 1.1.99.39]
Predicted SEED Role
"Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD" in subsystem Glycolate, glyoxylate interconversions or Photorespiration (oxidative C2 cycle) (EC 1.1.99.14)
MetaCyc Pathways
- glycolate and glyoxylate degradation II (2/2 steps found)
- L-lysine degradation V (6/9 steps found)
- glycolate and glyoxylate degradation I (2/4 steps found)
- superpathway of glycol metabolism and degradation (4/7 steps found)
- glycolate and glyoxylate degradation III (1/3 steps found)
- photorespiration II (6/10 steps found)
- photorespiration I (5/9 steps found)
- photorespiration III (5/9 steps found)
- superpathway of L-lysine degradation (17/43 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.1.99.14
Use Curated BLAST to search for 1.1.99.14 or 1.1.99.39
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q4ZTF0 at UniProt or InterPro
Protein Sequence (1015 amino acids)
>Psyr_2533 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal (Pseudomonas syringae pv. syringae B728a) MIALLKPTSEQIGHYDRFLNALAEAGFRGEIARDHGSRTVLATDNSIYQRLPQAAVFPMD SHDVAIVARLAARPEHQQVVLTPRGGGTGTNGQSLTDGVVVDLSRHMNAILEINVEERWV RVQTGVVKDQLNAALKPHGLFFAPELSTSNRATIGGMINTDASGQGSCTYGKTRDHVLEL STVLLGGSYVNSHALNVEQLASEQARVDRAGDVYRCAQQIADTKAQLIKDVFPPLNRCLT GYDLAHLREEDGRFNLNSVLCGSEGSLGFIVEARLNVLPIPKHSILVNVRYAGFMDALRD AKALMAHKPLSIETVDSKVLMLAMQDIVWHGVAEYFPQDPATPTLGINLIEFSGDELSEV EQRVHAFVAHLQTDTSVLRLGHTLAAGSAAVNRVYTMRKRSVGLLGNVKGEARPQPFVED TAVPPENLADYIQEFRALLDSHGLQYGMFGHVDAGVLHVRPILDMKDPAQAALIRPISDA VAALTKRYGGLLWGEHGKGLRSQYVPEYFGELYPALQALKAACDPFNQLNPGKIATPATV PDARLTLVDEVTLRGDLDRTIDERVWQSYDSALHCNGNGACYNYDTDDAMCPSWKATRDR IHSPKGRASLVREWLRLQGEQDVNVLTASARARSANVLKSLAERTVNSVARVAGQKDFSH EVYDAMAGCLACKSCAGQCPVKVNVPEFRSRFLELYHSRYLRPIKDYLIGSLEFSIPHLA RFPKLYNAIMGARPVRYLLEHVAGMVDSPLLSLTDFRAACARWNVGIATPQRLAASSEEE RKRTVVLVQDAFTRYFETPLAADWLELISRLGYQVYLAPFAPNGKPLQVQGFLQAFEKAA GFNSQSLGKLAGYGIPLIGLDPAMTLVYRQEYSKTLGSENVPEVMLPQEWLASTVEEGGD GASAETYYFLPHCTEKTNEPASVGLWQKAFARAGLKLEVLASGCCGMSGTYGHETRNAKT SDTIYRQSWQPLVARHGGEGRLVADGYSCRSQVKRQDGKVVQHPLQVLLERVRAL