Protein Info for Psyr_1792 in Pseudomonas syringae pv. syringae B728a

Annotation: Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3021 transmembrane" amino acids 1948 to 1967 (20 residues), see Phobius details PF00501: AMP-binding" amino acids 31 to 392 (362 residues), 280.4 bits, see alignment E=5.3e-87 amino acids 1105 to 1463 (359 residues), 253.1 bits, see alignment E=1e-78 amino acids 2169 to 2525 (357 residues), 296.4 bits, see alignment E=7.5e-92 TIGR01733: amino acid adenylation domain" amino acids 53 to 465 (413 residues), 406.1 bits, see alignment E=3.8e-125 amino acids 1126 to 1538 (413 residues), 421 bits, see alignment E=1.2e-129 amino acids 2190 to 2597 (408 residues), 418.9 bits, see alignment E=4.9e-129 PF13193: AMP-binding_C" amino acids 449 to 524 (76 residues), 27.5 bits, see alignment (E = 1.2e-09) amino acids 1522 to 1593 (72 residues), 37.8 bits, see alignment (E = 7.4e-13) amino acids 2581 to 2655 (75 residues), 34 bits, see alignment (E = 1.1e-11) PF00550: PP-binding" amino acids 554 to 616 (63 residues), 51.4 bits, see alignment (E = 2.7e-17) amino acids 1621 to 1681 (61 residues), 45.4 bits, see alignment (E = 2e-15) amino acids 2682 to 2743 (62 residues), 35.4 bits, see alignment (E = 2.6e-12) PF00668: Condensation" amino acids 637 to 1084 (448 residues), 345.1 bits, see alignment E=1.5e-106 amino acids 1712 to 2138 (427 residues), 126.5 bits, see alignment E=3.2e-40 PF00881: Nitroreductase" amino acids 2814 to 2985 (172 residues), 56.5 bits, see alignment 1e-18 TIGR03605: SagB-type dehydrogenase domain" amino acids 2847 to 2985 (139 residues), 81.9 bits, see alignment 1e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZVI3 at UniProt or InterPro

Protein Sequence (3021 amino acids)

>Psyr_1792 Amino acid adenylation (Pseudomonas syringae pv. syringae B728a)
MVDKSSSRGTGFAHPDTEQPFDQNQCVHGLFEAQAQRNPDAIAARFELDTLDYATLNTQA
NRLAHYLRSLGVGPDVRVGICLERSLGMLVGVLAVLKAGGAYVPLDPAYPKARLAHMLAD
SAPRVLLSHAPARAALLAALEEGEVATQVLDLTDTRLWAAQPTHNPDPHAVGLTSRHLAY
VIYTSGSTGMPKGVMVEHRGLIAVSAAWEPLYALHNPLNHLQMAGFSFDVFSADLIRALG
FGGTLVLCPRDTLMDPPALYRLLSEARIDFADFVPAVLNPLLVWAQEAGRDLSFMSTVVC
GSDIWTAHSARQLRGLCGEQTQIVQAYGVTEASIDSTCFEFEPDSHVDAVLPIGRALANT
RIYLLDAAGDRVPQGVTGELYIGGAGVARGYLNLPELTRERFIDSPFVAGDRLYRTGDLA
RYRADGHLEFLGRNDSQAKLRGLRLELGEIEARLAEVAGVRDNVVVLREDGAGVPRLIAY
FREQTGAALTPKGLRQHLQLSLPDYMIPAAFVRMDALPLTANGKLDRIALPEPGDDAFDR
HVFEAAQGALEVSLAAIWAEVLGVERVGRQDHFFALGGHSLLVMRVLAKVRQTLHLEVSP
SALFTAPVLQQFAERLSTARQGSPRPPIMAVARSEAHTLSSAQQRLWFLAQMEGGNAAYH
MPLNLRLRGPLQVAALERSFNQLVTRHEAQRTTFFAVEGEGRQRVAAAGAIMPLPVIDLR
DEHDAQARLLALIDAEGSKPFDLAVGPLMRVSLVKLADDDHVLLLTQHHIVSDGWSMGVL
TRELGLLYEAAIQQPAAHGQSLSLPPLAVQYVDYAAWQRQWLCGEVLDAQRRYWRETLSG
APLLLELPTDHKRPAAQDYRGGFVPLVFDRALTARLRVLATQQGTTLFMNLLAAWSLLLM
RLSGQDDVVIGVPSANRSQQELEGLIGFFVNTLALRMTRSGSPTVASWLQQARSVALAAQ
EHQDLPFDQVVELLNPPRSLAYSPVFQVLFAWEQHQDSDLELSGLDVSVLQSVQPVAKFD
LQLALSERDGQIVGGLEYASGLFEPETVVQMGEYLRRILTQMVEDSEQPLATLDLLNAEQ
HRRIVYDWNRTERDTSAQPDCVKRFEAVAQRTPDAVALLADERALTYAELNQSANRLANY
LIEQGVRPEQCVGLCLERSPQVVIGLLAILKTGAAYVPFDPAYPAERLAFMFADAAPSLL
LTQTALRAGLPPLPDTLPICCLDVQAQRWSGYSEANPQVPVSPGNLAYVLYTSGSTGRPK
GVAHSRAALDNLIAWQLEQTPVSQRVLQFASLNFDVSFQEICSTLCQGGSLVLMSEAGRK
DLAALRPTLVAEGVQRAFLPFAVLQQLASFTETDASVPMPLPKGGCEVITAGEALLVNDE
LRAFVCGLGGAQLHNQYGPTETHVVSQFSLNCDDAGQWPDAPPIGRPIANARLYVLDGDL
NPVPVGVAGELYIAGACLARGYLNRPDLSAERFLPDPFNPQSGARMYRSGDLARFAADGN
VHYLGRIDQQVKLRGFRVELGEIDSLLHQQPGVREAVVLLREDVPGDKRLVAYVVGPATA
ETLRAELHRHLPEHMVPTAWVALAQLPLTRNGKLDRQALPVPERQAASAYVAPRDETERQ
MVRIWAEVLKCPQVGIHDNFFELGGHSLLATRMIYMINQRMGGQLSLSSLFKTPVLMDLA
EQVRLGRGDGPSLDTPFAPIEADRSARYAPFPLTDIQQAYWFGREASVSLGGVSAHGYEE
LRIPGLDVPRFEQALNRMILRHDMLRVVFLGDGTQQVLDSVPTYHMPRNDLRGLSADAAQ
QALQVTRERQSHQVLDASRWPLFEFSLSLLDEGISHLHISLDALIVDAASTQILARELMA
FYADPQLQLPEPGLTFRDYVLAEQRLRNDSRYAQALDYWREKVATLAPAPDLPLVCQPES
ISQPHFTRRDRELSALQWSRLKELARQFAVTPSVMLLTAFSEVLALWSRQPRFTLSLPLF
NRMPLHPDVDEIIGDFTSLVLLEVNLDGAASFIDKARAVQARLWQDIDHSVVSGVRVLRE
LSQARGVQQTAMPIVFNSTLSEAAPELAEFNLADALNAEHMHSITQTPQVWLDHTLLELE
GRLLFNWDSIDELFPQGLIEQMFVAYNALLDRLLQADAWNAGTVDLIPLARLPVPEASPA
DSALMHELFDRQALAAPDALAVIGTQRQLSYRQLRAEARQLAALLQRRGVVPNQLVAVVM
ERGWEQVVATLAIQYAGGAYLPLDPALPVERLEHILQRAEASLALTQPALLQRVEWPAQV
QVISVSDSIIADAGRSDQAELNAVHLTPDDLAYVIYTSGSTGMPKGVVIDHRGAVNTLLD
INRRFAVGAADRVLAVSSLSFDLSVYDFFGTLAAGAAVVLLEPQQALDPAHWLTLIERHQ
VSLWNSVPALFGMLLEYVQSERSVLPTCLRVAMLSGDWIPLTLPERAWALQPALQLVSLG
GATEASIWSIQYPLQQVDPAWRSIPYGKALDHQRFYVLDDALQVRPTWVAGQLYIGGIGL
AKGYWRDEALSAGSFFAHPLTGERLYRTGDLGRWLPDGNIEFLGREDTQVKVQGHRIELG
EIEAALNRHPGVQSAVVRVLGEALGEKRLAGYVLKADPSLQASDFVQYLADKLPAYMLPT
SFTFVQEWPLSANGKVDKKRLPEPSQVQDAGPALEVQGPQEQQLVMIVQGVLKRPSIAAD
ANLLNLGATSIDIVRISNALSGELQFRPNVAQLLAQPTLLNLLGMYRRNLVNGSVVDSVR
QRAGSPEQVIEDPQQRARFKAEQRGRRTFAPQVAALDLARPDNPAFARRFSDYRSVRQFA
DRPIPSEAFAGLLASLAQGQLHGEVKYQFPSAGGLYPIQCYLYVKPQRVTGVAAGAYYYD
PVEHRLLMLDSEPLDPDTYDYFVNRPVYENAAFSLFFIADMAAIRPLYGERSRDFCHIEA
GGMAQLLSMTAVEQGLGLCGMGSLEEQQLSALFDLGPNHQLIYSMVGGLRNADEQRRAQV
EAFASAADQTDDASDMEEIEI