Protein Info for Psyr_1781 in Pseudomonas syringae pv. syringae B728a

Annotation: Beta-glucosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 906 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF00933: Glyco_hydro_3" amino acids 79 to 316 (238 residues), 104.4 bits, see alignment E=1.8e-33 PF01915: Glyco_hydro_3_C" amino acids 351 to 758 (408 residues), 165.4 bits, see alignment E=3.4e-52 PF07691: PA14" amino acids 442 to 598 (157 residues), 118.9 bits, see alignment E=3.4e-38 PF14310: Fn3-like" amino acids 795 to 865 (71 residues), 88.1 bits, see alignment 6.7e-29

Best Hits

KEGG orthology group: K01188, beta-glucosidase [EC: 3.2.1.21] (inferred from 100% identity to psb:Psyr_1781)

Predicted SEED Role

"glycosyl hydrolase, family 3"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.21

Use Curated BLAST to search for 3.2.1.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZVJ3 at UniProt or InterPro

Protein Sequence (906 amino acids)

>Psyr_1781 Beta-glucosidase (Pseudomonas syringae pv. syringae B728a)
MNDVRNNSVSMIKQGLGLSLLALGIAQAGSVFAVTPMTGNEVEARVGAMLDNMTQSEKIN
FSRVDDGRMIPKLDKFNLQGTVAYDSAMGVLVGGKTFGAQYPSPSALAATWSINRAKEFG
LAIGYETRIAGGQQMLSPAINLYRTPFNGRAAEYMSGEDPFLGAVLAPAVTNGIQVQGVQ
AAAKHYLMNEQEANRHYLDVKIDERAMQELYLPGFESLVKNSNIASIMCGYNKINGEYAC
ENHHLITDILKGQWGFQGNVMSDFNSVQDAFKGAWAGTDIDMPSGLQFTEAKLLPYVWNG
QLHQNVIDDKVRRNLRALVSYGFDKGINKAQPLEHREYGQLAALNVARESIVLLRNEPVD
GQKPVLPLSRNARIAVIGDMAMQPPTAPFGTAYSAPASYVTEVSGLKQLASDPSNVDYLP
QMSLNPKSSVWYQPGSDQQAISNTGVKAEYYANTSLSGDPVATRVEPGVNLDWITNTNVT
DYGSSAVNGYSPSAGSFSARFTGKIKPTITGPQVFKVRADGAYKLWINDELVLEDEGAQV
SFDLIPVVPRTVKTPNLKAGSEYNVRLEYRRLKGNFTPVLGGMNGVQMSWAALRPPKNLG
DYDAVVVAAGNNFEYEGESLDRPFELPQFQSELIGFIQKANPKTIVVLHGGGGMDMQPWA
DKVAASLHAWYPGQQGGQALAEILFGKVNPSGKLPITLDKKAQDNPSYASYSNPVPYYFS
SPNPPVEMSYSEGLYLGYRGYDKKHTKPLYPFGFGLSYTTYAYSDLKLSSNVLAPGATIQ
ASFKVTNTGDKAGFEVAQLYVQPSKPLVDRPEKELKGFSKVYLKPGESKTVTIALDSRSF
AYYSANSVSWNVDPGKFKVLVGKDSENLTLDRTVVALYPEQLTTRDSNPLPIPLRKAVQV
KAEQAY