Protein Info for Psyr_1737 in Pseudomonas syringae pv. syringae B728a

Annotation: carbohydrate ABC transporter ATP-binding protein, CUT1 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF00005: ABC_tran" amino acids 19 to 160 (142 residues), 95.8 bits, see alignment E=1.7e-31

Best Hits

Swiss-Prot: 33% identical to UGPC_ROSDO: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Roseobacter denitrificans (strain ATCC 33942 / OCh 114)

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 100% identity to psp:PSPPH_1681)

Predicted SEED Role

"Various polyols ABC transporter, ATP-binding component" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZVN7 at UniProt or InterPro

Protein Sequence (364 amino acids)

>Psyr_1737 carbohydrate ABC transporter ATP-binding protein, CUT1 family (Pseudomonas syringae pv. syringae B728a)
MSLTLEHVSRAVDGQVWIDDASLSFEPGSFNVLLGRTLSGKTSLMRLMAGLDKPDSGRVL
MNGVDVTHRPVRLRNVSMVYQQFINYPSMTVFENIASPLRQAGLSKDVIHSRVQETAKML
RIEKFLQRHPLELSGGQQQRTAMARALVKDAELILFDEPLVNLDYKLREELRQEMRELFA
ARHTIAIYATTEPNEALALGGTTTILHEGRVVQSGKTPEVYHRPATVLAAELFSEPPINL
MPGRIEGNEVSFANFVHFPLNVDLRAVGDGEYRFGVRPSHLSLVPSNDDDLELAVTVELA
EISGSETFLHVRNELFSLVLHLPGVHAYDVDAAIRVYIPTHKLFVFDQQGGLIQAPGLRM
ARVA