Protein Info for Psyr_1724 in Pseudomonas syringae pv. syringae B728a
Annotation: glutamate dehydrogenase (NAD)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 84% identical to DHE2_PSEAE: NAD-specific glutamate dehydrogenase (gdhB) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Predicted SEED Role
"NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form" in subsystem Glutamate dehydrogenases or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.1.2)
MetaCyc Pathways
- L-glutamate degradation I (1/1 steps found)
- L-alanine degradation II (to D-lactate) (2/3 steps found)
- ethene biosynthesis IV (engineered) (1/3 steps found)
- L-glutamate degradation V (via hydroxyglutarate) (6/10 steps found)
- L-glutamate degradation XI (reductive Stickland reaction) (3/7 steps found)
- 4-aminobutanoate degradation V (2/7 steps found)
- methylaspartate cycle (10/19 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.4.1.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q4ZVQ0 at UniProt or InterPro
Protein Sequence (1618 amino acids)
>Psyr_1724 glutamate dehydrogenase (NAD) (Pseudomonas syringae pv. syringae B728a) MAFFTAASKADFQHQLQAALAQHISEQALPQVALFAEQFFGIISLDELTQRRLSDLAGCT LSAWRLLERFEHAHPQVRVYNPDYERHGWQSTHTAVEVLHHDLPFLVDSVRTELNRRGYS IHTLQTTVLSVRRGAAGELLELLPKGTTGEDVLQESLMYLEIDRCANVSELNVLARELEQ VLGEVRAVVEDFGPMKARLHELLASIDANESNTDVEEKAEIKVFLQWLVDNHFTFLGYEE FEVRNDAEGGQLVYDESSFLGLTRLLRPGLTREELHIEDYAVKYLQEPVLLSFAKAAHPS RVHRPAYPDYVSIRQIDASGKVIKECRFMGLYTSSVYGESVRQIPYIRRKVAEVERRSGF DAKAHLGKELAQVVEVLPRDDLFQTPVDELFTTVMSIVQIQERNKIRVFLRKDPYGRFCY CLAYVPRDVYSTEVRQKIQQVLMDRLKASDCEFWTFFSESVLARVQLILRVDPKINLDID VAQLENEVIQACRSWKDDYASLVVESFGEAHGTNVLADFPKGFPAGYRERFAAHSAVVDM QHVLSLSEANPLVMSFYQPLAGGRQQLHCKLYHADTPLALSDVLPILENLGLRVLGEFPY RLHHANGREFWIHDFAFTYGEGLSLDIQQLNDTLQDAFVHIVRGDAENDAFNRLVLTAGL PWRDVALLRAYARYLKQIRLGFDLGYIATTLNNHTDIARELTRLFKTRFYLARKLGSDDL DDKQLRLEQAILTALDDVQVLNEDRILRRYLDLIKATLRTNFYQADANGQSKSYFSFKFN PRLIPELPKPVPKFEIFVYSPRVEGVHLRFGNVARGGLRWSDREEDFRTEVLGLVKAQQV KNSVIVPVGAKGGFVPRRLPTTGNRDEVQAEAIACYRIFISGLLDITDNLKEGALVPPVN VVRHDDDDPYLVVAADKGTATFSDIANGIAIDYGFWLGDAFASGGSAGYDHKKMGITAKG AWVGVQRHFRERDINVQQDSISVIGIGDMAGDVFGNGLLMSDKLQLVAAFNHLHIFIDPN PDPASSFAERQRLFNLPRSSWTDYDTSIMSAGGGIFPRSLKSIAITEQMKARFDIKADKL TPTELLHALLKAPVDLLWNGGIGTYVKSSEESHADVGDKANDALRVDGNELRCKVVGEGG NLGMTQLGRVEFGLNGGATNTDFIDNAGGVDCSDHEVNIKILLNEVVQAGDMTEKQRNQL LESMTDEVGHLVLGNNYKQTQALSLAARRAYERIAEYKRLMSDLEARGKLDRAIEFLPAE EQIAERIAAKQGLSRAELSVLISYSKIDLKEALLESRVPDDDYLARDMETAFPPSLGAKF STAMRGHRLKREIVSTQIANDLVNHMGITFVQRLKESTGMSAAAVAGAYVIVRDIFHLPH WFRQIEALDYKVLAEIQLALMDELMRLGRRATRWFLRSRRNELDAGRDVAHFGPHLAALG LKLDELLEGPTREIWQTRYQAYVEAGVPELLARMVAGTTHLYTLLPIIEASDVTGQNAAD VAKAYFAVGSALDITWYLQQISSLPVENNWQALAREAFRDDVDWQQRAITVSVLQMADGP SEIDARLALWLEQHTLMVERWRAMLVELRAASGTDYAMYAVANRELLDLAMSGQGITV