Protein Info for Psyr_1486 in Pseudomonas syringae pv. syringae B728a

Annotation: Cl- channel, voltage gated

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 17 to 41 (25 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 146 to 171 (26 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 216 to 240 (25 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details amino acids 310 to 332 (23 residues), see Phobius details amino acids 341 to 365 (25 residues), see Phobius details amino acids 382 to 405 (24 residues), see Phobius details PF00654: Voltage_CLC" amino acids 62 to 397 (336 residues), 248.1 bits, see alignment E=7.4e-78

Best Hits

Swiss-Prot: 100% identical to ERIC_PSESM: Chloride/fluoride channel protein (eriC) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)

KEGG orthology group: None (inferred from 100% identity to pst:PSPTO_4619)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZWD6 at UniProt or InterPro

Protein Sequence (448 amino acids)

>Psyr_1486 Cl- channel, voltage gated (Pseudomonas syringae pv. syringae B728a)
MSKFRRPEQLDLLPYIAKWLALAGLVALLAGSASALFLLSLDHATQWRETHPWVIWLLPV
AGFAVGLAYHLIGKPVDAGNNLIIDEIHDPKKIVPLRMVPMVLIGTVVSHLFGASVGREG
TAVQMGGALADQLTHVFRLRREDRRVILMAGISAGFASVFGTPLAGALFGLEVLAIGRMR
YDALFPCVVAAIVADQVGQAWGVVHTHYVIGEVVPVQLWSVMAVVAAGIVFGLTGLLFAT
ATHKLGAFVKRLITYSPLRPFAGGLLIAVAVWALGSNHYIDVDKYIGLGIPSIVQSFQMP
MAPWDWLGKMVFTVVSLGTGFKGGEVTPLFYIGATLGNALAPLLHLPFGMLAGIGFVAVF
AGAANTPLATIVMAMELFGPEIAPLAAIACIASYLVSGHTGIYHAQRVGHSKHHRPLPEE
IRLSDIKQFHAQSESASERKVTLAGEEK