Protein Info for Psyr_1464 in Pseudomonas syringae pv. syringae B728a

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 483 transmembrane" amino acids 140 to 159 (20 residues), see Phobius details amino acids 291 to 308 (18 residues), see Phobius details PF19587: DUF6094" amino acids 6 to 198 (193 residues), 109 bits, see alignment E=1.1e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1464)

Predicted SEED Role

"FIG023873: Plasmid related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZWF8 at UniProt or InterPro

Protein Sequence (483 amino acids)

>Psyr_1464 hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MALMFSRLARNFARNGYYPTDELTLERTLQALLPATSGRMRILDPCSGEGVALAEVAHRL
ERDRTETYAVEYDKERADHSKTLLDRVLQGDLMDTMISRQSFGLLWLNPPYGDLVADHSG
ASQYQGSGRKRLEKAFYQRSLPLLQYGGVMVFIVPHYVLDDELCGWLTNHFTGLRICAAV
DRTFKQVVIFGIRVRRQDLARPRELAAMREYLRAIGSGEEAADLLPATWPWEQYAVLPIA
NDLEHFYRITLEPEQFSEEVLRLRGLWPDFTLHFGQTGAQPRAPVKALSRWHLALALAAG
AITGVVTSRSGRVLVLKGDTYKDKVPKTEFTEDEDGNVFETRILTDRFVPRIRAWDMTPG
SSYLGYALTISSDATTPATHETTSNTAARSQNASIELGRVMLTHSVQSLLQNSSLDVRQY
LRRHATGDWGEISNDDWDSNQQALSADGRLFSGYDIEAEDETRLWIITESDRSATTVMLP
SDY