Protein Info for Psyr_1452 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 transmembrane" amino acids 452 to 470 (19 residues), see Phobius details PF00580: UvrD-helicase" amino acids 3 to 234 (232 residues), 46.5 bits, see alignment E=1e-15 PF13245: AAA_19" amino acids 15 to 231 (217 residues), 32.6 bits, see alignment E=2.2e-11 PF13361: UvrD_C" amino acids 387 to 465 (79 residues), 37.2 bits, see alignment E=6e-13 PF13538: UvrD_C_2" amino acids 409 to 461 (53 residues), 31.2 bits, see alignment 4e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1452)

Predicted SEED Role

"putative DNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZWH0 at UniProt or InterPro

Protein Sequence (487 amino acids)

>Psyr_1452 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MQWTEEQLPAIHSFAKKLLVQAFAGTGKTTTLVGYATHNSSVKMLYLCYNKAVEIAAKNR
FPRNVTCKTAHGLAYAVYGSQYKHKQAGNLRLTDIARTINTQDWELAKDIVSTLNAFMAS
KDLELLEDHFVRFQSNRTLTSVQEQYMSKALNLTRDVWQKMVDINDRSVPMTHDGYLKLY
QMSQPDLSQRFGAILLDEGQDVNPVIANLVQIQTITQVTVGDRHQQLYRFRGAVDALNSP
AMKDAEKHFLTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQPTLVKRALPDDLPHRTYL
HRTVSGVIENALRLVNQNHRMQWIGGIDSYSLRDLEDLFYFSRHMNDQVQQRKLLTDYAD
YDQYVVIAKATQDPEMLRSIKIIENYADLPQRIEQLRAASVTSELDATVTLTTAHRAKGL
EWDFVGLYDDFSADPLSPDIDAGKRDDELNLLYVAVTRAMKILAVNSLVIDIMQRFKDNR
SVIAATA