Protein Info for Psyr_1450 in Pseudomonas syringae pv. syringae B728a

Annotation: Plasmid conserved hypothetical protein, RAQPRD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details TIGR01690: integrative conjugative element protein, RAQPRD family" amino acids 21 to 113 (93 residues), 118.2 bits, see alignment E=6.8e-39 PF09686: Plasmid_RAQPRD" amino acids 38 to 112 (75 residues), 100 bits, see alignment E=3.5e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1450)

Predicted SEED Role

"Candidate type III effector Hop protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZWH2 at UniProt or InterPro

Protein Sequence (120 amino acids)

>Psyr_1450 Plasmid conserved hypothetical protein, RAQPRD (Pseudomonas syringae pv. syringae B728a)
MKINLPAIRSTSSRVQICLTAVLLCTPLLSTYAQAAGTASEQANVEVMIRQLNALEAVAQ
RSADLPNESAQRYHLDYPRLVSDISRIRQGLQDYLTPSRAQPRDPVEISGHYNVSGDHTP