Protein Info for Psyr_1133 in Pseudomonas syringae pv. syringae B728a

Annotation: Fimbrial biogenesis outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 844 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details PF13954: PapC_N" amino acids 52 to 194 (143 residues), 141.5 bits, see alignment E=3e-45 PF00577: Usher" amino acids 208 to 758 (551 residues), 541.1 bits, see alignment E=5.6e-166 PF13953: PapC_C" amino acids 769 to 829 (61 residues), 46.3 bits, see alignment 4.6e-16

Best Hits

KEGG orthology group: K07347, outer membrane usher protein (inferred from 100% identity to psb:Psyr_1133)

Predicted SEED Role

"Outer membrane usher protein FIMD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXD5 at UniProt or InterPro

Protein Sequence (844 amino acids)

>Psyr_1133 Fimbrial biogenesis outer membrane usher protein (Pseudomonas syringae pv. syringae B728a)
MEWRKEVNKGVIAQCALPHPRRGALGIGFGLTLMCAVSASAASSGGDGAVRFNTAFIQGS
DQPADLQEFLRSNSVLPGIYRVDIYVNRKLSGRRDIRFLKSPLSGLIEPCLSLEMLQSFG
LDLSRLPPGEASAQACFDLPARVAFARVDYQPGALRLTISVPQAVMSRGARGYVSPELWD
QGETAGFINYNFNGSRRRNKGLETEQYYVGLRNGLNVGAWRLRNESSLVGGSDRPWRYRS
NRTFAQRDITTLKSQLTLGETFTDSQVFDSVRFRGAALASDDGMLSDSERAYAPVIRGIA
ETNATVEVRQNGFLLYSGSVSPGPFEIADIYPSGSNGDLSVSVIEADGRVRTFTQAYASL
PIMVPAGSLRYSLAGGQVDNNDDQQASPAFASVALIYGLSERITGFAGVQLAEDYQAANI
GTGINTGLGAVSMDLTRSVSKVDQRARSGQSLRVRYANTLDVTDTTLAVAGYRYSTEQYR
TLSQHVSDSGALRQLRASGLARDRLELSITQIVPGQSASLSLTASEQRYWNLSGKTRQLY
LSYNAAWYSLNYSLSIERNEDFGRSGDASTDNRVALSVTLPLGSSPGSSRLSFNAVRDSR
GEYNAQAGLNGQVPGDRDTFYSVQAGRDSSSGSFGAGKVSTSTAFGRFEAGYSQGQDYDA
FSLSAAGSLVAHAGGVNLGQTLGETFALVQVPDVGGARLKSFSNVETARNGYAVLPYAQA
YRTNWVSLDTRQLGADVDLENAITQIVPRRGAIPVVRFKANVGRRVQFELVRVDGSKVPL
GASVEDEQGRALAVVDPGSQALVLSEQDAGSLWVRWSDQRCQATFSLPPRDPSRAYERIR
VVCR