Protein Info for Psyr_1083 in Pseudomonas syringae pv. syringae B728a
Annotation: 37kDa nucleoid-associated bacterial protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to NDPA_PSEU2: Nucleoid-associated protein Psyr_1083 (Psyr_1083) from Pseudomonas syringae pv. syringae (strain B728a)
KEGG orthology group: K06899, nucleoid-associated protein (inferred from 100% identity to psb:Psyr_1083)Predicted SEED Role
"Nucleoid-associated protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q4ZXI3 at UniProt or InterPro
Protein Sequence (333 amino acids)
>Psyr_1083 37kDa nucleoid-associated bacterial protein (Pseudomonas syringae pv. syringae B728a) MPIRHCIVHLIEKKPDGTPAVLHARDSELAESQAIENMLADLNESYNAKQGKAWGLFHPE SGAHPFSGWLKEYIDGGSDFTAFSRMAVEHLQKLMEESNLSVGGHVLFAHYQQGMTDYLA IALLHHSEGVAVNAELDVTPSRHLDLGQLHLAARINISEWQNNKQSKQYISFIKGKNGKK VSEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPEESAREKTKTLVDYASSQSKMG EPMGLEELSELIDEERPRAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSISFE AHLLGDKIEYDESAGTLIIKGLPTQLTDQLKRR