Protein Info for Psyr_0920 in Pseudomonas syringae pv. syringae B728a

Annotation: Glycosyl transferase, group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 831 PF00534: Glycos_transf_1" amino acids 221 to 377 (157 residues), 92.1 bits, see alignment E=6e-30 amino acids 656 to 804 (149 residues), 82.7 bits, see alignment E=4.7e-27 PF13692: Glyco_trans_1_4" amino acids 225 to 364 (140 residues), 74.3 bits, see alignment E=2.4e-24 amino acids 658 to 796 (139 residues), 54.5 bits, see alignment E=3.3e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0920)

Predicted SEED Role

"glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXZ4 at UniProt or InterPro

Protein Sequence (831 amino acids)

>Psyr_0920 Glycosyl transferase, group 1 (Pseudomonas syringae pv. syringae B728a)
MRIVIDLQGAQSESRFRGIGRYSLSLAQAIARNAGSHEIWLALNNCMSESIPDIRAAFAG
LIPESRIRIFDVPGDANPTPWVARASEVIRESFLSTLKPDAVVVSSLFEGYWANAVTSVG
AVPATHQTAVILYDLIPFMNEDVYLPTAELKDYYHRKIDWLKKADTLLAISDSSRQEAVT
HLGIDQAKIANISAAIGEQFIPDDVNLSKSSAILERLGVKSEFILYAPGGFDPRKNFARL
LEAYSTLPSALKARHQLVIASKLHAQQRMELLAFAEQYGVKASELVLTGYVNDADLIALY
SLTKLFVFPSTHEGFGLPVLEAMACGAAVIGSNCSSVPEVIGFDEALFDPFSVGSIAAKM
LEGLESDGFRSRLLTNAGEQCKKFSWDESAKKAIEALESRHSSVAADQPDLPDPGAALLE
RLISLSDTAPTDIELFQVAKSIAFDFAGADHRQLLLDVSSIVHSDAKSGIQRVVRSLLHE
FLNDQPAGLTVRPIYFADGQYYYANAFASRIYDQFSETTDAIIDFAQDDIYLSLDLNMHL
ASQLYPLHSQMRQMGVQVSYIVYDLLLFHRPDWWVAPNAELFNDWLQKISMVASSLICIS
GAVADELKQWLADNVDKCAGNKPSVKSFHLGADIDNSLPSAGLPDDAGELLARLAQKPSF
LMVSTVEPRKGHAQTLSAFESLWEQGQDINLVIVGKRGWLVDELVARLENHPEKGNRLFW
LEGISDEYLEKIYSASTCLIAASEGEGFGLPLIEAAQYGLPMIVRDLPVFREIALDHAFY
FSGMNDSDISAAITAWLDLHKDDKHPGSGDMPWLTWEQSAAQLKKALMFSV