Protein Info for Psyr_0748 in Pseudomonas syringae pv. syringae B728a

Annotation: Major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 115 to 115 (1 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 147 to 170 (24 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 241 to 260 (20 residues), see Phobius details amino acids 279 to 302 (24 residues), see Phobius details amino acids 318 to 340 (23 residues), see Phobius details amino acids 348 to 369 (22 residues), see Phobius details amino acids 375 to 397 (23 residues), see Phobius details amino acids 411 to 434 (24 residues), see Phobius details amino acids 440 to 466 (27 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 422 (396 residues), 140 bits, see alignment E=4.6e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0748)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZYG6 at UniProt or InterPro

Protein Sequence (480 amino acids)

>Psyr_0748 Major facilitator superfamily (Pseudomonas syringae pv. syringae B728a)
MSEAPTLKPNHAEVLTGARRWMCLAILLVGSFLPPLDYFIINIALPFIKADLRASDGMMQ
ASVSIYAAAFALFLILGGRLGDSYGARRTFIVGMLGFAFASAACGMAGSDLVLVVGRFVQ
GLFAAIMAPQSLALIHANFIGKDKALALSLYASIFGLACLVGQGAGGLLIEANIGGLSWR
SLFLINLPVVLLCLLAAVRLLTESTLQQSKYIDIRGCALFAGFLLPLLACLIEAAPRGWP
WWSWLALTLSAFCLKLFVTWENQLKRGGRAPFVDLAIFNLPPLLPGVLALFCFYAISPFF
LIYADFLQSGFQLSPAAVGARILPFGIGFFIAALSSAFLGQRQGKRGAMLGLSLQAASML
SVVMCICGGRPDLLYLPLILLGAGQGFALPAMVGVVSDTLNRHHPGMSSGLINTVLQCSS
AFFVASVGGVFFGVKNAIPGIIGLSDALVAATSLILVCQLLALLLIRISISREAASTAEH