Protein Info for Psyr_0671 in Pseudomonas syringae pv. syringae B728a

Annotation: nucleoside ABC transporter membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 38 to 57 (20 residues), see Phobius details amino acids 63 to 87 (25 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 222 to 239 (18 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 270 to 287 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 16 to 283 (268 residues), 126.8 bits, see alignment E=4.6e-41

Best Hits

Swiss-Prot: 46% identical to TSGCD_HALVD: Putative glucose ABC transporter permease protein TsgC13 (tsgC13) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to psb:Psyr_0671)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZYN1 at UniProt or InterPro

Protein Sequence (309 amino acids)

>Psyr_0671 nucleoside ABC transporter membrane protein (Pseudomonas syringae pv. syringae B728a)
MMDIDLLSNIFYAMVRCGTPLLLVALGELICEKSGVINLGQEGMMLFGAVIGFIVALNTG
NLWLGVLLAMLAGMLLSALFALVALVFNANQVATGLALTIFGVGLSSFVGAAWVGKPLSG
FEPVAIPLLSDIPLIGRMLFAQDLLVYLSFALFALVAWALLKSRVGLIIQAVGENPDAAS
AMGLPVLRVRTLAVLFGGAMAGLAGAYLSLAYTPMWAENMSAGRGWIALALVVFASWRVW
RLLLGAYLFGLASILHLVAQGIGLAIPSNLLAMLPYVATIIVLVLLSRDALRTRLYAPVS
LGQPWRAGH