Protein Info for Psyr_0626 in Pseudomonas syringae pv. syringae B728a

Annotation: DedA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 53 to 80 (28 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details amino acids 185 to 205 (21 residues), see Phobius details PF09335: VTT_dom" amino acids 47 to 171 (125 residues), 68.3 bits, see alignment E=4.6e-23

Best Hits

Swiss-Prot: 55% identical to DEDA_ECOLI: Protein DedA (dedA) from Escherichia coli (strain K12)

KEGG orthology group: K03975, membrane-associated protein (inferred from 100% identity to psb:Psyr_0626)

Predicted SEED Role

"DedA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZYS6 at UniProt or InterPro

Protein Sequence (215 amino acids)

>Psyr_0626 DedA (Pseudomonas syringae pv. syringae B728a)
MEFNPLDLILHLDVYLDLLVTNYGTWVYAILFLVIFCETGLVIMPFLPGDSLLFIAGAVA
AGGGMDPVLLAGLLMLAAILGDSTNYVIGRTVGEKLFSNSSSRIFRRDYLLRTQNFYARH
GGKTVTLARFLPIIRTFAPFVAGVGRMSYPRFVGFSVLGSVLWVGSLVTLGFFFGNVPFI
KHNLTFLVLAIILLSLVPMVIGVVRSRSARPVDAR