Protein Info for Psyr_0514 in Pseudomonas syringae pv. syringae B728a

Annotation: Intergral membrane protein, YccS:Integral membrane protein, YccS/YhfK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 732 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details amino acids 44 to 60 (17 residues), see Phobius details amino acids 68 to 85 (18 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 118 to 134 (17 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details amino acids 423 to 440 (18 residues), see Phobius details amino acids 445 to 463 (19 residues), see Phobius details amino acids 469 to 486 (18 residues), see Phobius details amino acids 492 to 510 (19 residues), see Phobius details amino acids 516 to 538 (23 residues), see Phobius details TIGR01667: integral membrane protein, YccS/YhfK family" amino acids 12 to 719 (708 residues), 917 bits, see alignment E=7.1e-280 TIGR01666: TIGR01666 family membrane protein" amino acids 14 to 717 (704 residues), 763.6 bits, see alignment E=1.8e-233 PF12805: FUSC-like" amino acids 71 to 354 (284 residues), 365.5 bits, see alignment E=2.3e-113 PF04632: FUSC" amino acids 406 to 700 (295 residues), 40.6 bits, see alignment E=2.1e-14 PF13515: FUSC_2" amino acids 411 to 530 (120 residues), 79.1 bits, see alignment E=4.9e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0514)

Predicted SEED Role

"FIG00956403: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZ38 at UniProt or InterPro

Protein Sequence (732 amino acids)

>Psyr_0514 Intergral membrane protein, YccS:Integral membrane protein, YccS/YhfK (Pseudomonas syringae pv. syringae B728a)
MASKSLRHTFRRLWALDKFSYSVRVFIALTGSMALCWYQNEMALLIPLFLGIIACALAET
DDSWQGRLNALAVTLVCFSIAALAVELLFPYPILFVCSLALASFCLTMLGALGERYGAIA
YGTLILSVYTMIGVDQRGGEVLDFWHEPMLLVAGAAWYGLLSVLWQMLFSNQPVQQALAR
LFRELGQYLKLKSTLFEPIRTLNVEARRLELAQQNGKVVAALNSTKEIILHRVGSGRPGS
KVSRYLKLYFIAQDIHERASSSHYPYNSLADAFFHSDVLFRCQRLLRQQGVACQALSESI
QLRQPFVYDPSFAEAMEDLHASLEHLRIQSNPAWRGLLRSLRALAANLGTLDRLISDASN
PDAVADATDSSLLDRSPRNLKDVWTRLRLQMTPTSLLFRHALRLPLALTIGYAMVHLIHP
SQGYWIILTTVFVCQPSYGATRLKLGQRIIGTAIGLTVGWVLFDLVTSPILQSMCAVLAG
VVFFVNRTTRYTLSTAAITVMVLFCFNQVGDGYGLFLPRLFDTLLGSLIAGLAVFLFLPD
WQGRRLNKVLANTLTCNSIYLRQIMQQYAKGKSDDLAYRLARRNAHNADAALSTTLANML
MEPGHFRKEADVGFRFLVLSHTLLSYLSGLGAHRDTQLPSDVREHLIDNVGATLAASIDE
IAAGLAEKKPVAVQSDAEEGLAAQLEQLPEDMDESQRLVQAQLALICRQLAPLRTLAAHL
IKAPEVAATHAV